Strain Fitness in Xanthobacter sp. DMC5 around GFF3895

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3893 and GFF3894 are separated by 199 nucleotidesGFF3894 and GFF3895 are separated by 246 nucleotidesGFF3895 and GFF3896 are separated by 154 nucleotidesGFF3896 and GFF3897 are separated by 232 nucleotides GFF3893 - hypothetical protein, at 260,520 to 260,789 GFF3893 GFF3894 - hypothetical protein, at 260,989 to 261,165 GFF3894 GFF3895 - hypothetical protein, at 261,412 to 261,765 GFF3895 GFF3896 - hypothetical protein, at 261,920 to 262,144 GFF3896 GFF3897 - hypothetical protein, at 262,377 to 263,624 GFF3897 Position (kb) 261 262Strain fitness (log2 ratio) -1 0 1at 260.510 kb on + strandat 260.892 kb on + strandat 260.906 kb on - strandat 261.172 kb on - strandat 261.784 kb on + strandat 261.794 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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260,510 + +0.4
260,892 + -1.4
260,906 - +0.1
261,172 - +0.7
261,784 + -1.2
261,794 + -0.6

Or see this region's nucleotide sequence