Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3890 and GFF3891 are separated by 5 nucleotides GFF3891 and GFF3892 are separated by 171 nucleotides GFF3892 and GFF3893 are separated by 117 nucleotides
GFF3890 - Trehalose-6-phosphate synthase, at 257,563 to 259,038
GFF3890
GFF3891 - Trehalose-6-phosphate phosphatase, at 259,044 to 259,835
GFF3891
GFF3892 - hypothetical protein, at 260,007 to 260,402
GFF3892
GFF3893 - hypothetical protein, at 260,520 to 260,789
GFF3893
Position (kb) 259
260 Strain fitness (log2 ratio) -1
0
1
2 at 258.060 kb on - strand, within GFF3890 at 258.060 kb on - strand, within GFF3890 at 258.497 kb on + strand, within GFF3890 at 258.617 kb on + strand, within GFF3890 at 258.741 kb on - strand, within GFF3890 at 258.809 kb on + strand, within GFF3890 at 258.849 kb on - strand, within GFF3890 at 259.554 kb on + strand, within GFF3891 at 259.866 kb on - strand at 260.006 kb on + strand at 260.006 kb on + strand at 260.006 kb on + strand at 260.006 kb on + strand at 260.007 kb on - strand at 260.007 kb on - strand at 260.204 kb on + strand, within GFF3892 at 260.205 kb on - strand, within GFF3892 at 260.205 kb on - strand, within GFF3892 at 260.314 kb on + strand, within GFF3892 at 260.315 kb on - strand, within GFF3892 at 260.315 kb on - strand, within GFF3892 at 260.317 kb on - strand, within GFF3892 at 260.317 kb on - strand, within GFF3892 at 260.317 kb on - strand, within GFF3892 at 260.324 kb on - strand, within GFF3892 at 260.400 kb on + strand at 260.510 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 258,060 - GFF3890 0.34 -0.6 258,060 - GFF3890 0.34 +0.2 258,497 + GFF3890 0.63 +1.8 258,617 + GFF3890 0.71 -0.3 258,741 - GFF3890 0.80 -0.6 258,809 + GFF3890 0.84 -0.0 258,849 - GFF3890 0.87 +2.1 259,554 + GFF3891 0.64 +1.7 259,866 - +1.1 260,006 + +0.2 260,006 + -0.1 260,006 + +0.7 260,006 + +0.3 260,007 - -1.4 260,007 - -0.8 260,204 + GFF3892 0.50 -0.5 260,205 - GFF3892 0.50 +0.8 260,205 - GFF3892 0.50 +0.4 260,314 + GFF3892 0.78 +1.0 260,315 - GFF3892 0.78 +1.2 260,315 - GFF3892 0.78 +1.1 260,317 - GFF3892 0.78 -0.3 260,317 - GFF3892 0.78 -0.9 260,317 - GFF3892 0.78 +0.4 260,324 - GFF3892 0.80 -0.5 260,400 + -0.8 260,510 + +0.4
Or see this region's nucleotide sequence