Strain Fitness in Xanthobacter sp. DMC5 around GFF3886

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3885 and GFF3886 are separated by 50 nucleotidesGFF3886 and GFF3887 are separated by 15 nucleotides GFF3885 - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, at 251,907 to 252,800 GFF3885 GFF3886 - Folylpolyglutamate synthase, at 252,851 to 254,176 GFF3886 GFF3887 - Phosphogluconate dehydratase, at 254,192 to 256,027 GFF3887 Position (kb) 252 253 254 255Strain fitness (log2 ratio) -1 0 1at 251.857 kb on + strandat 251.857 kb on + strandat 251.857 kb on + strandat 251.857 kb on + strandat 251.857 kb on + strandat 254.866 kb on + strand, within GFF3887at 254.868 kb on + strand, within GFF3887at 254.869 kb on - strand, within GFF3887at 254.869 kb on - strand, within GFF3887at 254.969 kb on + strand, within GFF3887

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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251,857 + +0.0
251,857 + -0.1
251,857 + -0.5
251,857 + -0.8
251,857 + +0.5
254,866 + GFF3887 0.37 -0.4
254,868 + GFF3887 0.37 +0.7
254,869 - GFF3887 0.37 +0.3
254,869 - GFF3887 0.37 +0.3
254,969 + GFF3887 0.42 +1.0

Or see this region's nucleotide sequence