Strain Fitness in Xanthobacter sp. DMC5 around GFF3877

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3876 and GFF3877 are separated by 63 nucleotidesGFF3877 and GFF3878 are separated by 378 nucleotides GFF3876 - DNA replication and repair protein RecF, at 241,631 to 242,779 GFF3876 GFF3877 - Beta sliding clamp, at 242,843 to 243,961 GFF3877 GFF3878 - Chromosomal replication initiator protein DnaA, at 244,340 to 245,800 GFF3878 Position (kb) 242 243 244Strain fitness (log2 ratio) -1 0 1at 242.566 kb on + strand, within GFF3876at 242.567 kb on - strand, within GFF3876at 242.686 kb on + strandat 242.687 kb on - strandat 242.687 kb on - strandat 242.687 kb on - strandat 242.753 kb on + strandat 242.753 kb on + strandat 244.045 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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242,566 + GFF3876 0.81 +0.7
242,567 - GFF3876 0.81 +0.4
242,686 + +1.2
242,687 - -0.2
242,687 - -0.5
242,687 - +0.3
242,753 + -0.0
242,753 + +0.5
244,045 - -0.3

Or see this region's nucleotide sequence