Strain Fitness in Xanthobacter sp. DMC5 around GFF3852

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3851 and GFF3852 are separated by 49 nucleotidesGFF3852 and GFF3853 are separated by 23 nucleotides GFF3851 - Ribosomal RNA small subunit methyltransferase B, at 217,849 to 219,219 GFF3851 GFF3852 - FtsZ-localized protein C, at 219,269 to 221,107 GFF3852 GFF3853 - Protease HtpX, at 221,131 to 222,042 GFF3853 Position (kb) 219 220 221 222Strain fitness (log2 ratio) -3 -2 -1 0 1at 218.975 kb on - strand, within GFF3851at 219.246 kb on + strandat 219.479 kb on + strand, within GFF3852at 221.435 kb on + strand, within GFF3853at 221.435 kb on + strand, within GFF3853at 221.630 kb on + strand, within GFF3853at 221.630 kb on + strand, within GFF3853at 221.876 kb on + strand, within GFF3853at 221.876 kb on + strand, within GFF3853at 221.876 kb on + strand, within GFF3853at 221.877 kb on - strand, within GFF3853at 222.085 kb on - strandat 222.085 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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218,975 - GFF3851 0.82 +1.5
219,246 + -2.9
219,479 + GFF3852 0.11 +1.7
221,435 + GFF3853 0.33 +0.2
221,435 + GFF3853 0.33 +0.1
221,630 + GFF3853 0.55 -0.1
221,630 + GFF3853 0.55 +0.4
221,876 + GFF3853 0.82 +0.4
221,876 + GFF3853 0.82 -0.7
221,876 + GFF3853 0.82 +0.7
221,877 - GFF3853 0.82 -0.6
222,085 - +1.5
222,085 - -1.5

Or see this region's nucleotide sequence