Strain Fitness in Xanthobacter sp. DMC5 around GFF3850

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3849 and GFF3850 are separated by 38 nucleotidesGFF3850 and GFF3851 are separated by 246 nucleotides GFF3849 - hypothetical protein, at 214,895 to 216,268 GFF3849 GFF3850 - Adenylosuccinate synthetase, at 216,307 to 217,602 GFF3850 GFF3851 - Ribosomal RNA small subunit methyltransferase B, at 217,849 to 219,219 GFF3851 Position (kb) 216 217 218Strain fitness (log2 ratio) -1 0 1at 217.838 kb on + strandat 217.838 kb on + strandat 217.839 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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217,838 + +0.4
217,838 + -0.4
217,839 - -0.4

Or see this region's nucleotide sequence