Strain Fitness in Xanthobacter sp. DMC5 around GFF3849

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3848 and GFF3849 are separated by 39 nucleotidesGFF3849 and GFF3850 are separated by 38 nucleotides GFF3848 - DNA mismatch repair protein MutS, at 212,069 to 214,855 GFF3848 GFF3849 - hypothetical protein, at 214,895 to 216,268 GFF3849 GFF3850 - Adenylosuccinate synthetase, at 216,307 to 217,602 GFF3850 Position (kb) 214 215 216 217Strain fitness (log2 ratio) -1 0 1at 214.112 kb on - strand, within GFF3848at 214.566 kb on - strand, within GFF3848at 214.849 kb on + strandat 214.850 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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214,112 - GFF3848 0.73 -0.0
214,566 - GFF3848 0.90 +1.4
214,849 + -0.1
214,850 - +0.2

Or see this region's nucleotide sequence