Strain Fitness in Xanthobacter sp. DMC5 around GFF3840

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3839 and GFF3840 are separated by 16 nucleotidesGFF3840 and GFF3841 are separated by 323 nucleotides GFF3839 - Argininosuccinate lyase, at 200,063 to 201,460 GFF3839 GFF3840 - Thiol:disulfide interchange protein TlpA, at 201,477 to 202,277 GFF3840 GFF3841 - UDP-N-acetylglucosamine 2-epimerase, at 202,601 to 203,758 GFF3841 Position (kb) 201 202 203Strain fitness (log2 ratio) -1 0 1at 202.301 kb on - strandat 202.492 kb on - strandat 202.494 kb on - strandat 202.570 kb on + strandat 203.170 kb on + strand, within GFF3841at 203.170 kb on + strand, within GFF3841at 203.170 kb on + strand, within GFF3841

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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202,301 - +0.7
202,492 - -0.3
202,494 - +0.0
202,570 + +0.5
203,170 + GFF3841 0.49 -0.4
203,170 + GFF3841 0.49 +1.0
203,170 + GFF3841 0.49 -0.5

Or see this region's nucleotide sequence