Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3830 and GFF3831 are separated by 120 nucleotides GFF3831 and GFF3832 are separated by 48 nucleotides GFF3832 and GFF3833 are separated by 242 nucleotides GFF3833 and GFF3834 are separated by 103 nucleotides
GFF3830 - DNA gyrase subunit B, at 189,658 to 192,084
GFF3830
GFF3831 - 7-cyano-7-deazaguanine synthase, at 192,205 to 192,921
GFF3831
GFF3832 - hypothetical protein, at 192,970 to 193,269
GFF3832
GFF3833 - Chaperone protein DnaJ, at 193,512 to 194,123
GFF3833
GFF3834 - Aerobic cobaltochelatase subunit CobS, at 194,227 to 195,210
GFF3834
Position (kb) 192
193
194 Strain fitness (log2 ratio) -1
0
1 at 192.124 kb on - strand at 193.343 kb on + strand at 193.343 kb on + strand at 193.344 kb on - strand at 193.345 kb on + strand at 193.346 kb on - strand at 193.449 kb on + strand at 193.499 kb on + strand at 193.500 kb on - strand at 193.699 kb on - strand, within GFF3833 at 193.746 kb on + strand, within GFF3833 at 193.746 kb on + strand, within GFF3833 at 193.747 kb on - strand, within GFF3833 at 194.005 kb on - strand, within GFF3833 at 194.092 kb on - strand at 194.226 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 192,124 - -0.1 193,343 + +1.3 193,343 + +1.5 193,344 - -0.8 193,345 + +1.2 193,346 - +0.7 193,449 + +0.5 193,499 + +0.1 193,500 - +1.2 193,699 - GFF3833 0.31 -0.9 193,746 + GFF3833 0.38 -0.5 193,746 + GFF3833 0.38 -0.0 193,747 - GFF3833 0.38 -0.7 194,005 - GFF3833 0.81 -1.3 194,092 - +0.7 194,226 + -0.9
Or see this region's nucleotide sequence