Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3829 and GFF3830 are separated by 6 nucleotides GFF3830 and GFF3831 are separated by 120 nucleotides GFF3831 and GFF3832 are separated by 48 nucleotides
GFF3829 - hypothetical protein, at 188,143 to 189,651
GFF3829
GFF3830 - DNA gyrase subunit B, at 189,658 to 192,084
GFF3830
GFF3831 - 7-cyano-7-deazaguanine synthase, at 192,205 to 192,921
GFF3831
GFF3832 - hypothetical protein, at 192,970 to 193,269
GFF3832
Position (kb) 189
190
191
192
193 Strain fitness (log2 ratio) -1
0
1 at 188.869 kb on + strand, within GFF3829 at 188.869 kb on + strand, within GFF3829 at 188.964 kb on - strand, within GFF3829 at 189.007 kb on + strand, within GFF3829 at 189.040 kb on + strand, within GFF3829 at 189.041 kb on - strand, within GFF3829 at 189.182 kb on + strand, within GFF3829 at 189.182 kb on + strand, within GFF3829 at 189.183 kb on - strand, within GFF3829 at 189.183 kb on - strand, within GFF3829 at 189.224 kb on + strand, within GFF3829 at 189.225 kb on - strand, within GFF3829 at 189.225 kb on - strand, within GFF3829 at 189.327 kb on - strand, within GFF3829 at 189.327 kb on - strand, within GFF3829 at 189.347 kb on + strand, within GFF3829 at 189.348 kb on - strand, within GFF3829 at 189.351 kb on - strand, within GFF3829 at 189.351 kb on - strand, within GFF3829 at 189.351 kb on - strand, within GFF3829 at 189.351 kb on - strand, within GFF3829 at 189.408 kb on + strand, within GFF3829 at 189.413 kb on - strand, within GFF3829 at 189.470 kb on + strand, within GFF3829 at 189.470 kb on + strand, within GFF3829 at 189.503 kb on + strand at 189.507 kb on + strand at 189.549 kb on - strand at 189.549 kb on - strand at 189.559 kb on + strand at 189.559 kb on + strand at 189.560 kb on - strand at 189.649 kb on + strand at 189.650 kb on - strand at 192.124 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 188,869 + GFF3829 0.48 +0.2 188,869 + GFF3829 0.48 -0.2 188,964 - GFF3829 0.54 +0.3 189,007 + GFF3829 0.57 +0.2 189,040 + GFF3829 0.59 -1.0 189,041 - GFF3829 0.60 -0.2 189,182 + GFF3829 0.69 +0.4 189,182 + GFF3829 0.69 +1.7 189,183 - GFF3829 0.69 +0.3 189,183 - GFF3829 0.69 -0.8 189,224 + GFF3829 0.72 -1.2 189,225 - GFF3829 0.72 +1.3 189,225 - GFF3829 0.72 +0.1 189,327 - GFF3829 0.78 -0.8 189,327 - GFF3829 0.78 -0.1 189,347 + GFF3829 0.80 +0.4 189,348 - GFF3829 0.80 +0.3 189,351 - GFF3829 0.80 +0.5 189,351 - GFF3829 0.80 +0.5 189,351 - GFF3829 0.80 +1.5 189,351 - GFF3829 0.80 +1.0 189,408 + GFF3829 0.84 -1.0 189,413 - GFF3829 0.84 -0.2 189,470 + GFF3829 0.88 -0.2 189,470 + GFF3829 0.88 +0.3 189,503 + -0.2 189,507 + -0.6 189,549 - +1.3 189,549 - -0.2 189,559 + +0.3 189,559 + +0.3 189,560 - +0.6 189,649 + +0.0 189,650 - +0.4 192,124 - -0.1
Or see this region's nucleotide sequence