Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF380 and GFF381 are separated by 75 nucleotides GFF381 and GFF382 are separated by 85 nucleotides GFF382 and GFF383 are separated by 124 nucleotides GFF383 and GFF384 are separated by 79 nucleotides
GFF380 - hypothetical protein, at 393,127 to 393,843
GFF380
GFF381 - Phosphopantetheine adenylyltransferase, at 393,919 to 394,461
GFF381
GFF382 - hypothetical protein, at 394,547 to 395,107
GFF382
GFF383 - Peptidyl-prolyl cis-trans isomerase B, at 395,232 to 395,690
GFF383
GFF384 - Proteasome subunit beta, at 395,770 to 396,540
GFF384
Position (kb) 394
395
396 Strain fitness (log2 ratio) -2
-1
0
1 at 393.625 kb on + strand, within GFF380 at 393.753 kb on - strand, within GFF380 at 393.913 kb on + strand at 394.547 kb on - strand at 394.547 kb on - strand at 394.649 kb on + strand, within GFF382 at 394.649 kb on + strand, within GFF382 at 394.649 kb on + strand, within GFF382 at 394.649 kb on + strand, within GFF382 at 394.650 kb on - strand, within GFF382 at 394.650 kb on - strand, within GFF382 at 394.650 kb on - strand, within GFF382 at 394.664 kb on + strand, within GFF382 at 394.665 kb on - strand, within GFF382 at 394.745 kb on + strand, within GFF382 at 394.746 kb on - strand, within GFF382 at 394.746 kb on - strand, within GFF382 at 394.812 kb on - strand, within GFF382 at 394.839 kb on - strand, within GFF382 at 394.976 kb on + strand, within GFF382 at 395.350 kb on - strand, within GFF383 at 395.351 kb on + strand, within GFF383 at 395.759 kb on - strand at 395.759 kb on - strand at 395.810 kb on + strand at 395.883 kb on - strand, within GFF384 at 395.906 kb on + strand, within GFF384 at 396.041 kb on + strand, within GFF384 at 396.074 kb on + strand, within GFF384 at 396.075 kb on - strand, within GFF384
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 393,625 + GFF380 0.69 -0.3 393,753 - GFF380 0.87 +0.1 393,913 + -0.8 394,547 - +0.1 394,547 - -0.8 394,649 + GFF382 0.18 +0.4 394,649 + GFF382 0.18 +0.2 394,649 + GFF382 0.18 -1.3 394,649 + GFF382 0.18 +1.0 394,650 - GFF382 0.18 -0.2 394,650 - GFF382 0.18 -1.8 394,650 - GFF382 0.18 +1.4 394,664 + GFF382 0.21 -0.2 394,665 - GFF382 0.21 -1.2 394,745 + GFF382 0.35 -1.2 394,746 - GFF382 0.35 +0.3 394,746 - GFF382 0.35 -0.4 394,812 - GFF382 0.47 -1.1 394,839 - GFF382 0.52 -0.7 394,976 + GFF382 0.76 +0.4 395,350 - GFF383 0.26 -0.9 395,351 + GFF383 0.26 +0.4 395,759 - +0.4 395,759 - -0.5 395,810 + +1.0 395,883 - GFF384 0.15 -1.2 395,906 + GFF384 0.18 -0.2 396,041 + GFF384 0.35 -0.3 396,074 + GFF384 0.39 -0.3 396,075 - GFF384 0.40 +0.4
Or see this region's nucleotide sequence