Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3812 and GFF3813 overlap by 1 nucleotides GFF3813 and GFF3814 are separated by 63 nucleotides GFF3814 and GFF3815 are separated by 78 nucleotides GFF3815 and GFF3816 overlap by 4 nucleotides
GFF3812 - Co-chaperone protein DjlA, at 170,156 to 170,860
GFF3812
GFF3813 - N-acetylmuramoyl-L-alanine amidase AmiD, at 170,860 to 171,639
GFF3813
GFF3814 - Arabinose 5-phosphate isomerase KdsD, at 171,703 to 172,755
GFF3814
GFF3815 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase, at 172,834 to 173,448
GFF3815
GFF3816 - hypothetical protein, at 173,445 to 174,152
GFF3816
Position (kb) 171
172
173 Strain fitness (log2 ratio) -2
-1
0
1
2 at 170.828 kb on + strand at 171.651 kb on + strand at 171.652 kb on - strand at 172.767 kb on - strand at 172.845 kb on - strand at 172.845 kb on - strand at 172.845 kb on - strand at 172.953 kb on + strand, within GFF3815 at 173.009 kb on + strand, within GFF3815 at 173.010 kb on - strand, within GFF3815 at 173.184 kb on - strand, within GFF3815 at 173.198 kb on + strand, within GFF3815 at 173.321 kb on + strand, within GFF3815 at 173.327 kb on + strand, within GFF3815 at 173.327 kb on + strand, within GFF3815 at 173.379 kb on - strand, within GFF3815 at 173.512 kb on + strand at 173.512 kb on + strand at 173.513 kb on - strand at 173.657 kb on - strand, within GFF3816 at 173.657 kb on - strand, within GFF3816 at 173.662 kb on + strand, within GFF3816
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 170,828 + -0.7 171,651 + +0.6 171,652 - +2.0 172,767 - +1.3 172,845 - +0.7 172,845 - -0.4 172,845 - -0.6 172,953 + GFF3815 0.19 +1.1 173,009 + GFF3815 0.28 +1.0 173,010 - GFF3815 0.29 -0.8 173,184 - GFF3815 0.57 +0.6 173,198 + GFF3815 0.59 -0.3 173,321 + GFF3815 0.79 +0.5 173,327 + GFF3815 0.80 +0.8 173,327 + GFF3815 0.80 +0.3 173,379 - GFF3815 0.89 -0.6 173,512 + -1.9 173,512 + -0.7 173,513 - -1.9 173,657 - GFF3816 0.30 -1.5 173,657 - GFF3816 0.30 -1.5 173,662 + GFF3816 0.31 -1.3
Or see this region's nucleotide sequence