Strain Fitness in Xanthobacter sp. DMC5 around GFF3796

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3795 and GFF3796 are separated by 289 nucleotidesGFF3796 and GFF3797 are separated by 22 nucleotides GFF3795 - Acetyl-coenzyme A synthetase, at 150,443 to 151,954 GFF3795 GFF3796 - Lipopolysaccharide export system ATP-binding protein LptB, at 152,244 to 153,092 GFF3796 GFF3797 - Long-chain-fatty-acid--CoA ligase FadD15, at 153,115 to 155,064 GFF3797 Position (kb) 152 153 154Strain fitness (log2 ratio) -1 0 1 2at 151.245 kb on + strand, within GFF3795at 151.246 kb on - strand, within GFF3795at 151.246 kb on - strand, within GFF3795at 151.279 kb on - strand, within GFF3795at 151.313 kb on + strand, within GFF3795at 151.314 kb on - strand, within GFF3795at 151.314 kb on - strand, within GFF3795at 151.368 kb on + strand, within GFF3795at 151.369 kb on - strand, within GFF3795at 151.369 kb on - strand, within GFF3795at 151.458 kb on + strand, within GFF3795at 151.459 kb on - strand, within GFF3795at 151.459 kb on - strand, within GFF3795at 151.479 kb on + strand, within GFF3795at 151.479 kb on + strand, within GFF3795at 151.480 kb on - strand, within GFF3795at 151.480 kb on - strand, within GFF3795at 151.480 kb on - strand, within GFF3795at 151.480 kb on - strand, within GFF3795at 151.480 kb on - strand, within GFF3795at 151.608 kb on + strand, within GFF3795at 151.609 kb on - strand, within GFF3795at 151.609 kb on - strand, within GFF3795at 151.744 kb on - strand, within GFF3795at 151.758 kb on + strand, within GFF3795at 151.759 kb on - strand, within GFF3795at 151.759 kb on - strand, within GFF3795at 151.857 kb on + strandat 151.878 kb on + strandat 152.080 kb on - strandat 152.083 kb on - strandat 152.189 kb on + strandat 152.196 kb on + strandat 152.206 kb on + strandat 152.207 kb on - strandat 152.207 kb on - strandat 152.207 kb on - strandat 152.251 kb on + strandat 152.709 kb on - strand, within GFF3796at 152.748 kb on + strand, within GFF3796at 152.748 kb on + strand, within GFF3796at 152.748 kb on + strand, within GFF3796at 152.748 kb on + strand, within GFF3796at 152.865 kb on + strand, within GFF3796at 152.865 kb on + strand, within GFF3796at 152.865 kb on + strand, within GFF3796at 152.865 kb on + strand, within GFF3796at 153.033 kb on + strandat 153.033 kb on + strandat 153.244 kb on + strandat 153.244 kb on + strandat 153.244 kb on + strandat 153.245 kb on - strandat 153.245 kb on - strandat 153.409 kb on + strand, within GFF3797at 153.409 kb on + strand, within GFF3797at 153.409 kb on + strand, within GFF3797at 153.409 kb on + strand, within GFF3797at 153.410 kb on - strand, within GFF3797at 153.439 kb on + strand, within GFF3797at 153.439 kb on + strand, within GFF3797at 153.439 kb on + strand, within GFF3797at 153.440 kb on - strand, within GFF3797at 153.440 kb on - strand, within GFF3797at 153.440 kb on - strand, within GFF3797at 153.440 kb on - strand, within GFF3797at 153.440 kb on - strand, within GFF3797at 153.440 kb on - strand, within GFF3797at 153.451 kb on + strand, within GFF3797at 153.451 kb on + strand, within GFF3797at 153.451 kb on + strand, within GFF3797at 153.452 kb on - strand, within GFF3797at 153.452 kb on - strand, within GFF3797at 153.452 kb on - strand, within GFF3797at 153.452 kb on - strand, within GFF3797at 153.452 kb on - strand, within GFF3797at 153.547 kb on + strand, within GFF3797at 153.548 kb on - strand, within GFF3797at 153.652 kb on + strand, within GFF3797at 153.652 kb on + strand, within GFF3797at 153.653 kb on - strand, within GFF3797at 153.814 kb on + strand, within GFF3797at 153.814 kb on + strand, within GFF3797at 153.814 kb on + strand, within GFF3797at 153.815 kb on - strand, within GFF3797at 153.815 kb on - strand, within GFF3797at 153.815 kb on - strand, within GFF3797at 153.856 kb on + strand, within GFF3797at 153.857 kb on - strand, within GFF3797

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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151,245 + GFF3795 0.53 +1.3
151,246 - GFF3795 0.53 -0.1
151,246 - GFF3795 0.53 -0.2
151,279 - GFF3795 0.55 -0.1
151,313 + GFF3795 0.58 -1.0
151,314 - GFF3795 0.58 -1.0
151,314 - GFF3795 0.58 +0.7
151,368 + GFF3795 0.61 +0.3
151,369 - GFF3795 0.61 +0.1
151,369 - GFF3795 0.61 -0.1
151,458 + GFF3795 0.67 -0.3
151,459 - GFF3795 0.67 +0.7
151,459 - GFF3795 0.67 +0.5
151,479 + GFF3795 0.69 +0.2
151,479 + GFF3795 0.69 -1.3
151,480 - GFF3795 0.69 -0.7
151,480 - GFF3795 0.69 +1.1
151,480 - GFF3795 0.69 -0.0
151,480 - GFF3795 0.69 +1.5
151,480 - GFF3795 0.69 -0.4
151,608 + GFF3795 0.77 -0.6
151,609 - GFF3795 0.77 +0.1
151,609 - GFF3795 0.77 +0.2
151,744 - GFF3795 0.86 +0.0
151,758 + GFF3795 0.87 +0.1
151,759 - GFF3795 0.87 -0.5
151,759 - GFF3795 0.87 -0.6
151,857 + -0.3
151,878 + -0.3
152,080 - -0.3
152,083 - +0.3
152,189 + -0.0
152,196 + -1.0
152,206 + -0.3
152,207 - +0.5
152,207 - +0.5
152,207 - -0.5
152,251 + -1.6
152,709 - GFF3796 0.55 +1.2
152,748 + GFF3796 0.59 +0.3
152,748 + GFF3796 0.59 +2.2
152,748 + GFF3796 0.59 -0.1
152,748 + GFF3796 0.59 +0.3
152,865 + GFF3796 0.73 -0.6
152,865 + GFF3796 0.73 +1.1
152,865 + GFF3796 0.73 -0.2
152,865 + GFF3796 0.73 -0.1
153,033 + -0.1
153,033 + +0.0
153,244 + +0.3
153,244 + -0.3
153,244 + +0.4
153,245 - +0.3
153,245 - +0.5
153,409 + GFF3797 0.15 -1.0
153,409 + GFF3797 0.15 +0.3
153,409 + GFF3797 0.15 +0.8
153,409 + GFF3797 0.15 +0.1
153,410 - GFF3797 0.15 +0.3
153,439 + GFF3797 0.17 +0.7
153,439 + GFF3797 0.17 -1.2
153,439 + GFF3797 0.17 -1.5
153,440 - GFF3797 0.17 -0.6
153,440 - GFF3797 0.17 +2.5
153,440 - GFF3797 0.17 -0.4
153,440 - GFF3797 0.17 +0.2
153,440 - GFF3797 0.17 +0.8
153,440 - GFF3797 0.17 -0.0
153,451 + GFF3797 0.17 -0.4
153,451 + GFF3797 0.17 -0.6
153,451 + GFF3797 0.17 -0.9
153,452 - GFF3797 0.17 +1.0
153,452 - GFF3797 0.17 +0.5
153,452 - GFF3797 0.17 -0.5
153,452 - GFF3797 0.17 +0.6
153,452 - GFF3797 0.17 -1.1
153,547 + GFF3797 0.22 -0.2
153,548 - GFF3797 0.22 -0.6
153,652 + GFF3797 0.28 -0.5
153,652 + GFF3797 0.28 -0.7
153,653 - GFF3797 0.28 -0.0
153,814 + GFF3797 0.36 +1.1
153,814 + GFF3797 0.36 -0.2
153,814 + GFF3797 0.36 -0.1
153,815 - GFF3797 0.36 +0.7
153,815 - GFF3797 0.36 +0.4
153,815 - GFF3797 0.36 -1.5
153,856 + GFF3797 0.38 -0.2
153,857 - GFF3797 0.38 -0.2

Or see this region's nucleotide sequence