Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3791 and GFF3792 overlap by 4 nucleotides GFF3792 and GFF3793 are separated by 26 nucleotides GFF3793 and GFF3794 are separated by 311 nucleotides
GFF3791 - Acetyl-/propionyl-coenzyme A carboxylase alpha chain, at 144,714 to 146,714
GFF3791
GFF3792 - Enoyl-CoA-hydratase, at 146,711 to 147,502
GFF3792
GFF3793 - Methylmalonyl-CoA carboxyltransferase 12S subunit, at 147,529 to 149,136
GFF3793
GFF3794 - HTH-type transcriptional repressor KstR2, at 149,448 to 150,134
GFF3794
Position (kb) 147
148
149
150 Strain fitness (log2 ratio) -2
-1
0
1
2 at 147.421 kb on + strand, within GFF3792 at 147.663 kb on - strand at 147.684 kb on - strand at 148.035 kb on + strand, within GFF3793 at 148.035 kb on + strand, within GFF3793 at 148.170 kb on - strand, within GFF3793 at 148.556 kb on + strand, within GFF3793 at 148.716 kb on - strand, within GFF3793 at 148.893 kb on - strand, within GFF3793 at 149.578 kb on + strand, within GFF3794 at 149.579 kb on - strand, within GFF3794 at 149.579 kb on - strand, within GFF3794 at 149.623 kb on + strand, within GFF3794 at 149.623 kb on + strand, within GFF3794 at 149.624 kb on - strand, within GFF3794 at 149.662 kb on + strand, within GFF3794 at 149.662 kb on + strand, within GFF3794 at 149.743 kb on + strand, within GFF3794 at 149.744 kb on - strand, within GFF3794 at 149.744 kb on - strand, within GFF3794 at 149.842 kb on + strand, within GFF3794 at 149.984 kb on - strand, within GFF3794 at 149.989 kb on + strand, within GFF3794 at 150.049 kb on + strand, within GFF3794 at 150.049 kb on + strand, within GFF3794 at 150.050 kb on - strand, within GFF3794 at 150.061 kb on + strand, within GFF3794 at 150.062 kb on - strand, within GFF3794 at 150.062 kb on - strand, within GFF3794 at 150.062 kb on - strand, within GFF3794 at 150.070 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 147,421 + GFF3792 0.90 -0.5 147,663 - +0.5 147,684 - +0.2 148,035 + GFF3793 0.31 +0.2 148,035 + GFF3793 0.31 +0.5 148,170 - GFF3793 0.40 +1.8 148,556 + GFF3793 0.64 -0.9 148,716 - GFF3793 0.74 -0.0 148,893 - GFF3793 0.85 +0.5 149,578 + GFF3794 0.19 +0.5 149,579 - GFF3794 0.19 -0.7 149,579 - GFF3794 0.19 -0.5 149,623 + GFF3794 0.25 -0.6 149,623 + GFF3794 0.25 +0.2 149,624 - GFF3794 0.26 -0.7 149,662 + GFF3794 0.31 +0.3 149,662 + GFF3794 0.31 -0.4 149,743 + GFF3794 0.43 -2.2 149,744 - GFF3794 0.43 +0.8 149,744 - GFF3794 0.43 -2.3 149,842 + GFF3794 0.57 -0.7 149,984 - GFF3794 0.78 -0.4 149,989 + GFF3794 0.79 +0.5 150,049 + GFF3794 0.87 -1.4 150,049 + GFF3794 0.87 -0.2 150,050 - GFF3794 0.88 -1.1 150,061 + GFF3794 0.89 -0.3 150,062 - GFF3794 0.89 -0.2 150,062 - GFF3794 0.89 +1.0 150,062 - GFF3794 0.89 +1.3 150,070 + +0.1
Or see this region's nucleotide sequence