Strain Fitness in Xanthobacter sp. DMC5 around GFF3792

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3791 and GFF3792 overlap by 4 nucleotidesGFF3792 and GFF3793 are separated by 26 nucleotides GFF3791 - Acetyl-/propionyl-coenzyme A carboxylase alpha chain, at 144,714 to 146,714 GFF3791 GFF3792 - Enoyl-CoA-hydratase, at 146,711 to 147,502 GFF3792 GFF3793 - Methylmalonyl-CoA carboxyltransferase 12S subunit, at 147,529 to 149,136 GFF3793 Position (kb) 146 147 148Strain fitness (log2 ratio) -1 0 1 2at 146.102 kb on - strand, within GFF3791at 146.527 kb on + strandat 147.421 kb on + strand, within GFF3792at 147.663 kb on - strandat 147.684 kb on - strandat 148.035 kb on + strand, within GFF3793at 148.035 kb on + strand, within GFF3793at 148.170 kb on - strand, within GFF3793

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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146,102 - GFF3791 0.69 -0.0
146,527 + -0.5
147,421 + GFF3792 0.90 -0.5
147,663 - +0.5
147,684 - +0.2
148,035 + GFF3793 0.31 +0.2
148,035 + GFF3793 0.31 +0.5
148,170 - GFF3793 0.40 +1.8

Or see this region's nucleotide sequence