Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3790 and GFF3791 overlap by 1 nucleotides GFF3791 and GFF3792 overlap by 4 nucleotides GFF3792 and GFF3793 are separated by 26 nucleotides
GFF3790 - 3-hydroxy-3-isohexenylglutaryl-CoA/hydroxy-methyl glutaryl-CoA lyase, at 143,809 to 144,714
GFF3790
GFF3791 - Acetyl-/propionyl-coenzyme A carboxylase alpha chain, at 144,714 to 146,714
GFF3791
GFF3792 - Enoyl-CoA-hydratase, at 146,711 to 147,502
GFF3792
GFF3793 - Methylmalonyl-CoA carboxyltransferase 12S subunit, at 147,529 to 149,136
GFF3793
Position (kb) 144
145
146
147 Strain fitness (log2 ratio) -1
0
1
2 at 143.718 kb on + strand at 143.736 kb on + strand at 143.767 kb on + strand at 143.945 kb on + strand, within GFF3790 at 143.945 kb on + strand, within GFF3790 at 143.945 kb on + strand, within GFF3790 at 143.946 kb on - strand, within GFF3790 at 143.946 kb on - strand, within GFF3790 at 143.946 kb on - strand, within GFF3790 at 143.990 kb on + strand, within GFF3790 at 143.990 kb on + strand, within GFF3790 at 144.080 kb on + strand, within GFF3790 at 144.080 kb on + strand, within GFF3790 at 144.080 kb on + strand, within GFF3790 at 144.081 kb on - strand, within GFF3790 at 144.235 kb on + strand, within GFF3790 at 144.235 kb on + strand, within GFF3790 at 144.236 kb on - strand, within GFF3790 at 144.267 kb on - strand, within GFF3790 at 144.384 kb on + strand, within GFF3790 at 144.384 kb on + strand, within GFF3790 at 144.384 kb on + strand, within GFF3790 at 144.384 kb on + strand, within GFF3790 at 144.385 kb on - strand, within GFF3790 at 144.385 kb on - strand, within GFF3790 at 144.486 kb on - strand, within GFF3790 at 144.486 kb on - strand, within GFF3790 at 144.616 kb on - strand, within GFF3790 at 144.736 kb on - strand at 146.102 kb on - strand, within GFF3791 at 146.527 kb on + strand at 147.421 kb on + strand, within GFF3792 at 147.663 kb on - strand at 147.684 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 143,718 + -0.0 143,736 + -0.0 143,767 + +1.1 143,945 + GFF3790 0.15 -1.4 143,945 + GFF3790 0.15 +0.1 143,945 + GFF3790 0.15 -0.5 143,946 - GFF3790 0.15 +2.7 143,946 - GFF3790 0.15 +1.5 143,946 - GFF3790 0.15 +0.2 143,990 + GFF3790 0.20 -0.2 143,990 + GFF3790 0.20 +2.2 144,080 + GFF3790 0.30 +0.8 144,080 + GFF3790 0.30 +1.0 144,080 + GFF3790 0.30 +0.7 144,081 - GFF3790 0.30 -0.0 144,235 + GFF3790 0.47 -0.5 144,235 + GFF3790 0.47 -0.0 144,236 - GFF3790 0.47 -0.0 144,267 - GFF3790 0.51 -0.6 144,384 + GFF3790 0.63 +0.3 144,384 + GFF3790 0.63 -0.4 144,384 + GFF3790 0.63 +0.1 144,384 + GFF3790 0.63 -0.9 144,385 - GFF3790 0.64 +0.4 144,385 - GFF3790 0.64 +1.3 144,486 - GFF3790 0.75 +1.9 144,486 - GFF3790 0.75 -0.2 144,616 - GFF3790 0.89 +1.2 144,736 - +0.7 146,102 - GFF3791 0.69 -0.0 146,527 + -0.5 147,421 + GFF3792 0.90 -0.5 147,663 - +0.5 147,684 - +0.2
Or see this region's nucleotide sequence