Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF378 and GFF379 are separated by 182 nucleotides GFF379 and GFF380 are separated by 115 nucleotides GFF380 and GFF381 are separated by 75 nucleotides
GFF378 - hypothetical protein, at 391,090 to 392,097
GFF378
GFF379 - Thiol:disulfide interchange protein DsbD, at 392,280 to 393,011
GFF379
GFF380 - hypothetical protein, at 393,127 to 393,843
GFF380
GFF381 - Phosphopantetheine adenylyltransferase, at 393,919 to 394,461
GFF381
Position (kb) 392
393
394 Strain fitness (log2 ratio) -2
-1
0
1 at 391.317 kb on + strand, within GFF378 at 391.409 kb on + strand, within GFF378 at 391.409 kb on + strand, within GFF378 at 391.410 kb on - strand, within GFF378 at 391.415 kb on + strand, within GFF378 at 391.868 kb on + strand, within GFF378 at 391.869 kb on - strand, within GFF378 at 391.869 kb on - strand, within GFF378 at 391.902 kb on - strand, within GFF378 at 392.113 kb on + strand at 393.042 kb on + strand at 393.376 kb on + strand, within GFF380 at 393.508 kb on + strand, within GFF380 at 393.509 kb on - strand, within GFF380 at 393.625 kb on + strand, within GFF380 at 393.753 kb on - strand, within GFF380 at 393.913 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 391,317 + GFF378 0.23 -0.2 391,409 + GFF378 0.32 -2.1 391,409 + GFF378 0.32 -0.9 391,410 - GFF378 0.32 +0.7 391,415 + GFF378 0.32 +0.8 391,868 + GFF378 0.77 -0.8 391,869 - GFF378 0.77 +0.1 391,869 - GFF378 0.77 +0.8 391,902 - GFF378 0.81 +1.4 392,113 + -0.2 393,042 + -0.4 393,376 + GFF380 0.35 -0.1 393,508 + GFF380 0.53 +1.2 393,509 - GFF380 0.53 +0.5 393,625 + GFF380 0.69 -0.3 393,753 - GFF380 0.87 +0.1 393,913 + -0.8
Or see this region's nucleotide sequence