Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3772 and GFF3773 are separated by 192 nucleotides GFF3773 and GFF3774 are separated by 18 nucleotides GFF3774 and GFF3775 are separated by 141 nucleotides GFF3775 and GFF3776 are separated by 21 nucleotides
GFF3772 - hypothetical protein, at 118,606 to 119,535
GFF3772
GFF3773 - hypothetical protein, at 119,728 to 120,093
GFF3773
GFF3774 - hypothetical protein, at 120,112 to 120,558
GFF3774
GFF3775 - putative NTE family protein, at 120,700 to 121,143
GFF3775
GFF3776 - hypothetical protein, at 121,165 to 123,810
GFF3776
Position (kb) 120
121 Strain fitness (log2 ratio) -2
-1
0
1 at 119.257 kb on + strand, within GFF3772 at 119.257 kb on + strand, within GFF3772 at 119.257 kb on + strand, within GFF3772 at 119.444 kb on - strand at 119.474 kb on - strand at 119.648 kb on + strand at 119.821 kb on + strand, within GFF3773 at 119.821 kb on + strand, within GFF3773 at 119.822 kb on - strand, within GFF3773 at 119.822 kb on - strand, within GFF3773 at 120.563 kb on - strand at 120.592 kb on + strand at 120.607 kb on + strand at 120.608 kb on - strand at 120.608 kb on - strand at 120.906 kb on + strand, within GFF3775 at 120.986 kb on + strand, within GFF3775 at 120.986 kb on + strand, within GFF3775 at 120.986 kb on + strand, within GFF3775 at 120.986 kb on + strand, within GFF3775 at 121.107 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 119,257 + GFF3772 0.70 -0.1 119,257 + GFF3772 0.70 -1.0 119,257 + GFF3772 0.70 +0.4 119,444 - -1.0 119,474 - +0.9 119,648 + +0.4 119,821 + GFF3773 0.25 +1.3 119,821 + GFF3773 0.25 +0.1 119,822 - GFF3773 0.26 -1.5 119,822 - GFF3773 0.26 -0.7 120,563 - +0.0 120,592 + -0.0 120,607 + -0.9 120,608 - +0.7 120,608 - -0.9 120,906 + GFF3775 0.46 +0.5 120,986 + GFF3775 0.64 +0.0 120,986 + GFF3775 0.64 +0.4 120,986 + GFF3775 0.64 -2.4 120,986 + GFF3775 0.64 +0.7 121,107 + -2.2
Or see this region's nucleotide sequence