Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3771 and GFF3772 are separated by 103 nucleotides GFF3772 and GFF3773 are separated by 192 nucleotides GFF3773 and GFF3774 are separated by 18 nucleotides
GFF3771 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin), at 117,174 to 118,502
GFF3771
GFF3772 - hypothetical protein, at 118,606 to 119,535
GFF3772
GFF3773 - hypothetical protein, at 119,728 to 120,093
GFF3773
GFF3774 - hypothetical protein, at 120,112 to 120,558
GFF3774
Position (kb) 118
119
120 Strain fitness (log2 ratio) -1
0
1 at 118.575 kb on + strand at 118.576 kb on - strand at 118.576 kb on - strand at 118.735 kb on + strand, within GFF3772 at 118.735 kb on + strand, within GFF3772 at 118.735 kb on + strand, within GFF3772 at 118.735 kb on + strand, within GFF3772 at 118.736 kb on - strand, within GFF3772 at 118.736 kb on - strand, within GFF3772 at 118.736 kb on - strand, within GFF3772 at 118.736 kb on - strand, within GFF3772 at 118.786 kb on + strand, within GFF3772 at 118.787 kb on - strand, within GFF3772 at 119.071 kb on + strand, within GFF3772 at 119.072 kb on - strand, within GFF3772 at 119.257 kb on + strand, within GFF3772 at 119.257 kb on + strand, within GFF3772 at 119.257 kb on + strand, within GFF3772 at 119.444 kb on - strand at 119.474 kb on - strand at 119.648 kb on + strand at 119.821 kb on + strand, within GFF3773 at 119.821 kb on + strand, within GFF3773 at 119.822 kb on - strand, within GFF3773 at 119.822 kb on - strand, within GFF3773
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 118,575 + +1.2 118,576 - +0.5 118,576 - +0.0 118,735 + GFF3772 0.14 -0.7 118,735 + GFF3772 0.14 -0.2 118,735 + GFF3772 0.14 +0.0 118,735 + GFF3772 0.14 -0.5 118,736 - GFF3772 0.14 +0.2 118,736 - GFF3772 0.14 -0.3 118,736 - GFF3772 0.14 +0.7 118,736 - GFF3772 0.14 -0.6 118,786 + GFF3772 0.19 -1.5 118,787 - GFF3772 0.19 +1.3 119,071 + GFF3772 0.50 -1.7 119,072 - GFF3772 0.50 -0.5 119,257 + GFF3772 0.70 -0.1 119,257 + GFF3772 0.70 -1.0 119,257 + GFF3772 0.70 +0.4 119,444 - -1.0 119,474 - +0.9 119,648 + +0.4 119,821 + GFF3773 0.25 +1.3 119,821 + GFF3773 0.25 +0.1 119,822 - GFF3773 0.26 -1.5 119,822 - GFF3773 0.26 -0.7
Or see this region's nucleotide sequence