Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3769 and GFF3770 are separated by 219 nucleotides GFF3770 and GFF3771 are separated by 115 nucleotides GFF3771 and GFF3772 are separated by 103 nucleotides
GFF3769 - D-beta-hydroxybutyrate dehydrogenase, at 115,517 to 116,299
GFF3769
GFF3770 - hypothetical protein, at 116,519 to 117,058
GFF3770
GFF3771 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin), at 117,174 to 118,502
GFF3771
GFF3772 - hypothetical protein, at 118,606 to 119,535
GFF3772
Position (kb) 117
118
119 Strain fitness (log2 ratio) -2
-1
0
1 at 116.241 kb on + strand at 116.685 kb on - strand, within GFF3770 at 116.804 kb on + strand, within GFF3770 at 116.804 kb on + strand, within GFF3770 at 117.136 kb on + strand at 118.575 kb on + strand at 118.576 kb on - strand at 118.576 kb on - strand at 118.735 kb on + strand, within GFF3772 at 118.735 kb on + strand, within GFF3772 at 118.735 kb on + strand, within GFF3772 at 118.735 kb on + strand, within GFF3772 at 118.736 kb on - strand, within GFF3772 at 118.736 kb on - strand, within GFF3772 at 118.736 kb on - strand, within GFF3772 at 118.736 kb on - strand, within GFF3772 at 118.786 kb on + strand, within GFF3772 at 118.787 kb on - strand, within GFF3772 at 119.071 kb on + strand, within GFF3772 at 119.072 kb on - strand, within GFF3772 at 119.257 kb on + strand, within GFF3772 at 119.257 kb on + strand, within GFF3772 at 119.257 kb on + strand, within GFF3772 at 119.444 kb on - strand at 119.474 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 116,241 + -2.0 116,685 - GFF3770 0.31 -0.5 116,804 + GFF3770 0.53 -1.0 116,804 + GFF3770 0.53 -0.5 117,136 + -0.1 118,575 + +1.2 118,576 - +0.5 118,576 - +0.0 118,735 + GFF3772 0.14 -0.7 118,735 + GFF3772 0.14 -0.2 118,735 + GFF3772 0.14 +0.0 118,735 + GFF3772 0.14 -0.5 118,736 - GFF3772 0.14 +0.2 118,736 - GFF3772 0.14 -0.3 118,736 - GFF3772 0.14 +0.7 118,736 - GFF3772 0.14 -0.6 118,786 + GFF3772 0.19 -1.5 118,787 - GFF3772 0.19 +1.3 119,071 + GFF3772 0.50 -1.7 119,072 - GFF3772 0.50 -0.5 119,257 + GFF3772 0.70 -0.1 119,257 + GFF3772 0.70 -1.0 119,257 + GFF3772 0.70 +0.4 119,444 - -1.0 119,474 - +0.9
Or see this region's nucleotide sequence