Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3762 and GFF3763 are separated by 4 nucleotides GFF3763 and GFF3764 are separated by 16 nucleotides GFF3764 and GFF3765 are separated by 91 nucleotides GFF3765 and GFF3766 overlap by 41 nucleotides
GFF3762 - Protein QmcA, at 108,326 to 109,318
GFF3762
GFF3763 - Inner membrane protein YbbJ, at 109,323 to 109,769
GFF3763
GFF3764 - hypothetical protein, at 109,786 to 112,395
GFF3764
GFF3765 - hypothetical protein, at 112,487 to 113,281
GFF3765
GFF3766 - O-acetyl-ADP-ribose deacetylase, at 113,241 to 113,810
GFF3766
Position (kb) 109
110
111
112
113 Strain fitness (log2 ratio) -1
0
1 at 109.097 kb on + strand, within GFF3762 at 109.098 kb on - strand, within GFF3762 at 109.098 kb on - strand, within GFF3762 at 109.100 kb on + strand, within GFF3762 at 109.100 kb on + strand, within GFF3762 at 109.100 kb on + strand, within GFF3762 at 109.100 kb on + strand, within GFF3762 at 109.101 kb on - strand, within GFF3762 at 109.115 kb on + strand, within GFF3762 at 109.116 kb on - strand, within GFF3762 at 109.116 kb on - strand, within GFF3762 at 109.175 kb on + strand, within GFF3762 at 109.176 kb on - strand, within GFF3762 at 112.431 kb on - strand at 112.667 kb on + strand, within GFF3765 at 112.668 kb on - strand, within GFF3765 at 112.668 kb on - strand, within GFF3765 at 112.710 kb on + strand, within GFF3765 at 112.710 kb on + strand, within GFF3765 at 112.710 kb on + strand, within GFF3765 at 112.711 kb on - strand, within GFF3765 at 112.711 kb on - strand, within GFF3765 at 112.974 kb on + strand, within GFF3765 at 112.974 kb on + strand, within GFF3765 at 112.975 kb on - strand, within GFF3765 at 112.975 kb on - strand, within GFF3765 at 112.975 kb on - strand, within GFF3765
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 109,097 + GFF3762 0.78 +0.7 109,098 - GFF3762 0.78 +0.4 109,098 - GFF3762 0.78 -0.5 109,100 + GFF3762 0.78 -0.1 109,100 + GFF3762 0.78 -0.3 109,100 + GFF3762 0.78 -0.3 109,100 + GFF3762 0.78 +1.7 109,101 - GFF3762 0.78 +0.4 109,115 + GFF3762 0.79 +1.5 109,116 - GFF3762 0.80 -0.7 109,116 - GFF3762 0.80 +0.6 109,175 + GFF3762 0.85 +1.1 109,176 - GFF3762 0.86 +0.1 112,431 - +0.7 112,667 + GFF3765 0.23 -0.2 112,668 - GFF3765 0.23 +0.5 112,668 - GFF3765 0.23 -1.4 112,710 + GFF3765 0.28 -1.2 112,710 + GFF3765 0.28 +1.5 112,710 + GFF3765 0.28 -0.4 112,711 - GFF3765 0.28 +0.5 112,711 - GFF3765 0.28 -0.1 112,974 + GFF3765 0.61 +0.2 112,974 + GFF3765 0.61 +0.6 112,975 - GFF3765 0.61 +0.1 112,975 - GFF3765 0.61 +1.7 112,975 - GFF3765 0.61 +0.9
Or see this region's nucleotide sequence