Strain Fitness in Xanthobacter sp. DMC5 around GFF3758

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3757 and GFF3758 are separated by 90 nucleotidesGFF3758 and GFF3759 are separated by 11 nucleotidesGFF3759 and GFF3760 are separated by 5 nucleotides GFF3757 - UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-di aminopimelate ligase, at 102,353 to 103,831 GFF3757 GFF3758 - putative peptidoglycan D,D-transpeptidase FtsI, at 103,922 to 105,868 GFF3758 GFF3759 - hypothetical protein, at 105,880 to 106,488 GFF3759 GFF3760 - Ribosomal RNA small subunit methyltransferase H, at 106,494 to 107,531 GFF3760 Position (kb) 103 104 105 106Strain fitness (log2 ratio) -1 0 1at 103.955 kb on + strandat 103.955 kb on + strandat 103.956 kb on - strandat 103.956 kb on - strandat 106.496 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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103,955 + +0.0
103,955 + +1.0
103,956 - +0.5
103,956 - -1.0
106,496 - +0.4

Or see this region's nucleotide sequence