Strain Fitness in Xanthobacter sp. DMC5 around GFF3755

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3753 and GFF3754 are separated by 243 nucleotidesGFF3754 and GFF3755 are separated by 77 nucleotidesGFF3755 and GFF3756 are separated by 7 nucleotides GFF3753 - UDP-N-acetylmuramoylalanine--D-glutamate ligase, at 97,707 to 99,263 GFF3753 GFF3754 - hypothetical protein, at 99,507 to 99,725 GFF3754 GFF3755 - Phospho-N-acetylmuramoyl-pentapeptide-transferase , at 99,803 to 100,888 GFF3755 GFF3756 - UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase, at 100,896 to 102,356 GFF3756 Position (kb) 99 100 101Strain fitness (log2 ratio) -1 0 1at 99.710 kb on + strandat 99.710 kb on + strandat 99.711 kb on - strandat 99.711 kb on - strandat 99.711 kb on - strandat 99.784 kb on + strandat 99.785 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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99,710 + +0.6
99,710 + +0.1
99,711 - -0.6
99,711 - -0.2
99,711 - +0.6
99,784 + -0.3
99,785 - +0.1

Or see this region's nucleotide sequence