Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3752 and GFF3753 are separated by 108 nucleotides GFF3753 and GFF3754 are separated by 243 nucleotides GFF3754 and GFF3755 are separated by 77 nucleotides
GFF3752 - hypothetical protein, at 96,705 to 97,598
GFF3752
GFF3753 - UDP-N-acetylmuramoylalanine--D-glutamate ligase, at 97,707 to 99,263
GFF3753
GFF3754 - hypothetical protein, at 99,507 to 99,725
GFF3754
GFF3755 - Phospho-N-acetylmuramoyl-pentapeptide-transferase , at 99,803 to 100,888
GFF3755
Position (kb) 97
98
99
100 Strain fitness (log2 ratio) -2
-1
0
1 at 96.819 kb on + strand, within GFF3752 at 96.819 kb on + strand, within GFF3752 at 96.820 kb on - strand, within GFF3752 at 96.820 kb on - strand, within GFF3752 at 96.964 kb on + strand, within GFF3752 at 96.965 kb on - strand, within GFF3752 at 96.965 kb on - strand, within GFF3752 at 96.965 kb on - strand, within GFF3752 at 97.018 kb on + strand, within GFF3752 at 97.019 kb on - strand, within GFF3752 at 97.072 kb on + strand, within GFF3752 at 97.138 kb on + strand, within GFF3752 at 97.138 kb on + strand, within GFF3752 at 97.138 kb on + strand, within GFF3752 at 97.138 kb on + strand, within GFF3752 at 97.139 kb on - strand, within GFF3752 at 97.267 kb on + strand, within GFF3752 at 97.268 kb on - strand, within GFF3752 at 97.268 kb on - strand, within GFF3752 at 97.337 kb on - strand, within GFF3752 at 97.337 kb on - strand, within GFF3752 at 97.337 kb on - strand, within GFF3752 at 97.522 kb on + strand at 97.523 kb on - strand at 99.710 kb on + strand at 99.710 kb on + strand at 99.711 kb on - strand at 99.711 kb on - strand at 99.711 kb on - strand at 99.784 kb on + strand at 99.785 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 96,819 + GFF3752 0.13 -0.2 96,819 + GFF3752 0.13 -0.6 96,820 - GFF3752 0.13 -0.1 96,820 - GFF3752 0.13 -0.3 96,964 + GFF3752 0.29 +0.1 96,965 - GFF3752 0.29 +1.1 96,965 - GFF3752 0.29 +0.2 96,965 - GFF3752 0.29 +0.2 97,018 + GFF3752 0.35 -0.5 97,019 - GFF3752 0.35 +0.7 97,072 + GFF3752 0.41 -2.2 97,138 + GFF3752 0.48 +1.4 97,138 + GFF3752 0.48 +0.8 97,138 + GFF3752 0.48 -0.2 97,138 + GFF3752 0.48 -0.5 97,139 - GFF3752 0.49 +0.2 97,267 + GFF3752 0.63 +1.4 97,268 - GFF3752 0.63 -0.4 97,268 - GFF3752 0.63 -1.1 97,337 - GFF3752 0.71 -0.6 97,337 - GFF3752 0.71 +0.5 97,337 - GFF3752 0.71 +1.7 97,522 + +1.1 97,523 - -0.6 99,710 + +0.6 99,710 + +0.1 99,711 - -0.6 99,711 - -0.2 99,711 - +0.6 99,784 + -0.3 99,785 - +0.1
Or see this region's nucleotide sequence