Strain Fitness in Xanthobacter sp. DMC5 around GFF3746

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3745 and GFF3746 are separated by 104 nucleotidesGFF3746 and GFF3747 are separated by 696 nucleotides GFF3745 - Chromosome-partitioning protein ParB, at 88,011 to 88,904 GFF3745 GFF3746 - Transcriptional regulatory protein ros, at 89,009 to 89,473 GFF3746 GFF3747 - Recombination protein RecR, at 90,170 to 90,775 GFF3747 Position (kb) 89 90Strain fitness (log2 ratio) -1 0 1at 89.614 kb on - strandat 89.835 kb on + strandat 89.836 kb on - strandat 89.838 kb on + strandat 89.838 kb on + strandat 89.838 kb on + strandat 89.885 kb on + strandat 89.885 kb on + strandat 89.885 kb on + strandat 89.886 kb on - strandat 90.099 kb on + strandat 90.100 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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89,614 - +1.3
89,835 + +1.2
89,836 - +0.1
89,838 + +0.6
89,838 + -0.1
89,838 + +0.2
89,885 + +0.1
89,885 + -0.6
89,885 + +1.0
89,886 - -0.5
90,099 + -0.5
90,100 - -0.0

Or see this region's nucleotide sequence