Strain Fitness in Xanthobacter sp. DMC5 around GFF3745

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3743 and GFF3744 are separated by 105 nucleotidesGFF3744 and GFF3745 are separated by 26 nucleotidesGFF3745 and GFF3746 are separated by 104 nucleotides GFF3743 - Ribosomal RNA small subunit methyltransferase G, at 86,368 to 87,024 GFF3743 GFF3744 - Chromosome partitioning protein ParA, at 87,130 to 87,984 GFF3744 GFF3745 - Chromosome-partitioning protein ParB, at 88,011 to 88,904 GFF3745 GFF3746 - Transcriptional regulatory protein ros, at 89,009 to 89,473 GFF3746 Position (kb) 88 89Strain fitness (log2 ratio) -1 0 1at 87.022 kb on + strandat 89.614 kb on - strandat 89.835 kb on + strandat 89.836 kb on - strandat 89.838 kb on + strandat 89.838 kb on + strandat 89.838 kb on + strandat 89.885 kb on + strandat 89.885 kb on + strandat 89.885 kb on + strandat 89.886 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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87,022 + +0.1
89,614 - +1.3
89,835 + +1.2
89,836 - +0.1
89,838 + +0.6
89,838 + -0.1
89,838 + +0.2
89,885 + +0.1
89,885 + -0.6
89,885 + +1.0
89,886 - -0.5

Or see this region's nucleotide sequence