Strain Fitness in Xanthobacter sp. DMC5 around GFF3744

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3742 and GFF3743 are separated by 43 nucleotidesGFF3743 and GFF3744 are separated by 105 nucleotidesGFF3744 and GFF3745 are separated by 26 nucleotides GFF3742 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG, at 84,447 to 86,324 GFF3742 GFF3743 - Ribosomal RNA small subunit methyltransferase G, at 86,368 to 87,024 GFF3743 GFF3744 - Chromosome partitioning protein ParA, at 87,130 to 87,984 GFF3744 GFF3745 - Chromosome-partitioning protein ParB, at 88,011 to 88,904 GFF3745 Position (kb) 87 88Strain fitness (log2 ratio) -1 0 1at 86.166 kb on + strandat 86.166 kb on + strandat 86.563 kb on - strand, within GFF3743at 87.022 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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86,166 + -1.0
86,166 + -1.2
86,563 - GFF3743 0.30 -0.0
87,022 + +0.1

Or see this region's nucleotide sequence