Strain Fitness in Xanthobacter sp. DMC5 around GFF374

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF373 and GFF374 are separated by 170 nucleotidesGFF374 and GFF375 are separated by 194 nucleotides GFF373 - Cobalamin biosynthesis protein CobD, at 385,786 to 386,751 GFF373 GFF374 - hypothetical protein, at 386,922 to 387,680 GFF374 GFF375 - hypothetical protein, at 387,875 to 389,149 GFF375 Position (kb) 386 387 388Strain fitness (log2 ratio) -2 -1 0 1at 386.813 kb on + strandat 386.862 kb on + strandat 386.873 kb on + strandat 386.874 kb on - strandat 387.129 kb on + strand, within GFF374at 387.778 kb on + strandat 387.779 kb on - strandat 388.064 kb on + strand, within GFF375at 388.116 kb on - strand, within GFF375at 388.611 kb on - strand, within GFF375

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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386,813 + -0.7
386,862 + -0.3
386,873 + -0.3
386,874 - +0.8
387,129 + GFF374 0.27 -0.4
387,778 + -2.5
387,779 - +0.7
388,064 + GFF375 0.15 -0.8
388,116 - GFF375 0.19 +0.6
388,611 - GFF375 0.58 -1.3

Or see this region's nucleotide sequence