Strain Fitness in Xanthobacter sp. DMC5 around GFF3739

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3737 and GFF3738 are separated by 3 nucleotidesGFF3738 and GFF3739 are separated by 9 nucleotidesGFF3739 and GFF3740 are separated by 190 nucleotides GFF3737 - Shikimate dehydrogenase (NADP(+)), at 78,506 to 79,354 GFF3737 GFF3738 - Dephospho-CoA kinase, at 79,358 to 79,960 GFF3738 GFF3739 - DNA polymerase III subunit epsilon, at 79,970 to 80,692 GFF3739 GFF3740 - hypothetical protein, at 80,883 to 82,895 GFF3740 Position (kb) 79 80 81Strain fitness (log2 ratio) -2 -1 0 1 2at 80.654 kb on + strandat 81.370 kb on + strand, within GFF3740at 81.370 kb on + strand, within GFF3740at 81.370 kb on + strand, within GFF3740at 81.370 kb on + strand, within GFF3740at 81.371 kb on - strand, within GFF3740at 81.569 kb on + strand, within GFF3740at 81.569 kb on + strand, within GFF3740at 81.569 kb on + strand, within GFF3740

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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80,654 + -0.4
81,370 + GFF3740 0.24 +0.9
81,370 + GFF3740 0.24 -0.8
81,370 + GFF3740 0.24 -2.0
81,370 + GFF3740 0.24 +0.3
81,371 - GFF3740 0.24 +2.0
81,569 + GFF3740 0.34 -2.3
81,569 + GFF3740 0.34 -0.4
81,569 + GFF3740 0.34 +0.2

Or see this region's nucleotide sequence