Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3735 and GFF3736 are separated by 123 nucleotides GFF3736 and GFF3737 overlap by 4 nucleotides GFF3737 and GFF3738 are separated by 3 nucleotides GFF3738 and GFF3739 are separated by 9 nucleotides
GFF3735 - Putative pyruvate, phosphate dikinase regulatory protein, at 76,932 to 77,786
GFF3735
GFF3736 - 7-methyl-GTP pyrophosphatase, at 77,910 to 78,509
GFF3736
GFF3737 - Shikimate dehydrogenase (NADP(+)), at 78,506 to 79,354
GFF3737
GFF3738 - Dephospho-CoA kinase, at 79,358 to 79,960
GFF3738
GFF3739 - DNA polymerase III subunit epsilon, at 79,970 to 80,692
GFF3739
Position (kb) 78
79
80 Strain fitness (log2 ratio) -1
0
1 at 77.619 kb on + strand, within GFF3735 at 77.620 kb on - strand, within GFF3735 at 77.620 kb on - strand, within GFF3735 at 77.620 kb on - strand, within GFF3735 at 77.748 kb on + strand at 77.749 kb on - strand at 77.749 kb on - strand at 78.166 kb on + strand, within GFF3736 at 78.168 kb on + strand, within GFF3736 at 78.168 kb on + strand, within GFF3736
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 77,619 + GFF3735 0.80 +1.1 77,620 - GFF3735 0.80 +1.5 77,620 - GFF3735 0.80 -0.9 77,620 - GFF3735 0.80 +0.3 77,748 + +0.5 77,749 - -0.0 77,749 - +1.0 78,166 + GFF3736 0.43 +0.8 78,168 + GFF3736 0.43 -1.1 78,168 + GFF3736 0.43 -1.6
Or see this region's nucleotide sequence