Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3732 and GFF3733 are separated by 292 nucleotides GFF3733 and GFF3734 are separated by 26 nucleotides GFF3734 and GFF3735 are separated by 336 nucleotides
GFF3732 - Transcription termination factor Rho, at 73,533 to 74,804
GFF3732
GFF3733 - hypothetical protein, at 75,097 to 75,522
GFF3733
GFF3734 - Uroporphyrinogen decarboxylase, at 75,549 to 76,595
GFF3734
GFF3735 - Putative pyruvate, phosphate dikinase regulatory protein, at 76,932 to 77,786
GFF3735
Position (kb) 75
76
77 Strain fitness (log2 ratio) -1
0
1 at 74.805 kb on - strand at 75.049 kb on - strand at 76.621 kb on - strand at 76.621 kb on - strand at 76.959 kb on + strand at 76.960 kb on - strand at 77.064 kb on + strand, within GFF3735 at 77.142 kb on - strand, within GFF3735 at 77.248 kb on - strand, within GFF3735 at 77.248 kb on - strand, within GFF3735 at 77.248 kb on - strand, within GFF3735 at 77.304 kb on + strand, within GFF3735 at 77.409 kb on - strand, within GFF3735 at 77.433 kb on + strand, within GFF3735 at 77.434 kb on - strand, within GFF3735 at 77.504 kb on - strand, within GFF3735
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 74,805 - -0.8 75,049 - -0.4 76,621 - +0.2 76,621 - +0.7 76,959 + +0.4 76,960 - +0.2 77,064 + GFF3735 0.15 -0.2 77,142 - GFF3735 0.25 -1.0 77,248 - GFF3735 0.37 +0.4 77,248 - GFF3735 0.37 +1.5 77,248 - GFF3735 0.37 +0.7 77,304 + GFF3735 0.44 -0.5 77,409 - GFF3735 0.56 +1.0 77,433 + GFF3735 0.59 +1.1 77,434 - GFF3735 0.59 +1.3 77,504 - GFF3735 0.67 +0.3
Or see this region's nucleotide sequence