Strain Fitness in Xanthobacter sp. DMC5 around GFF3733

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3732 and GFF3733 are separated by 292 nucleotidesGFF3733 and GFF3734 are separated by 26 nucleotides GFF3732 - Transcription termination factor Rho, at 73,533 to 74,804 GFF3732 GFF3733 - hypothetical protein, at 75,097 to 75,522 GFF3733 GFF3734 - Uroporphyrinogen decarboxylase, at 75,549 to 76,595 GFF3734 Position (kb) 75 76Strain fitness (log2 ratio) -1 0 1at 74.805 kb on - strandat 75.049 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
74,805 - -0.8
75,049 - -0.4

Or see this region's nucleotide sequence