Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3727 and GFF3728 overlap by 4 nucleotides GFF3728 and GFF3729 are separated by 80 nucleotides GFF3729 and GFF3730 are separated by 92 nucleotides
GFF3727 - hypothetical protein, at 69,111 to 69,977
GFF3727
GFF3728 - hypothetical protein, at 69,974 to 70,828
GFF3728
GFF3729 - Ferric uptake regulation protein, at 70,909 to 71,340
GFF3729
GFF3730 - [Ribosomal protein S18]-alanine N-acetyltransferase, at 71,433 to 71,909
GFF3730
Position (kb) 70
71
72 Strain fitness (log2 ratio) -2
-1
0
1 at 69.947 kb on - strand at 70.272 kb on + strand, within GFF3728 at 70.272 kb on + strand, within GFF3728 at 70.272 kb on + strand, within GFF3728 at 70.273 kb on - strand, within GFF3728 at 70.273 kb on - strand, within GFF3728 at 70.273 kb on - strand, within GFF3728 at 70.556 kb on + strand, within GFF3728 at 70.692 kb on + strand, within GFF3728 at 70.943 kb on + strand at 70.943 kb on + strand at 70.944 kb on - strand at 71.026 kb on + strand, within GFF3729 at 71.476 kb on + strand at 71.476 kb on + strand at 71.507 kb on - strand, within GFF3730 at 71.512 kb on - strand, within GFF3730 at 71.522 kb on - strand, within GFF3730
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 69,947 - +1.2 70,272 + GFF3728 0.35 -0.2 70,272 + GFF3728 0.35 -0.9 70,272 + GFF3728 0.35 -0.0 70,273 - GFF3728 0.35 +0.7 70,273 - GFF3728 0.35 -1.3 70,273 - GFF3728 0.35 -1.4 70,556 + GFF3728 0.68 -0.6 70,692 + GFF3728 0.84 +0.3 70,943 + +0.4 70,943 + -1.8 70,944 - +0.5 71,026 + GFF3729 0.27 -0.9 71,476 + -1.0 71,476 + +0.5 71,507 - GFF3730 0.16 -1.5 71,512 - GFF3730 0.17 -1.7 71,522 - GFF3730 0.19 +1.2
Or see this region's nucleotide sequence