Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3713 and GFF3714 are separated by 154 nucleotides GFF3714 and GFF3715 are separated by 159 nucleotides GFF3715 and GFF3716 are separated by 7 nucleotides GFF3716 and GFF3717 are separated by 352 nucleotides
GFF3713 - Adaptive-response sensory-kinase SasA, at 54,986 to 56,635
GFF3713
GFF3714 - Protein-export protein SecB, at 56,790 to 57,269
GFF3714
GFF3715 - hypothetical protein, at 57,429 to 57,623
GFF3715
GFF3716 - Undecaprenyl-diphosphatase, at 57,631 to 58,437
GFF3716
GFF3717 - FtsZ-localized protein A, at 58,790 to 59,479
GFF3717
Position (kb) 57
58
59 Strain fitness (log2 ratio) -2
-1
0
1 at 56.636 kb on - strand at 56.765 kb on - strand at 56.842 kb on + strand, within GFF3714 at 56.843 kb on - strand, within GFF3714 at 56.843 kb on - strand, within GFF3714 at 57.335 kb on - strand at 57.335 kb on - strand at 57.335 kb on - strand at 57.811 kb on - strand, within GFF3716 at 57.833 kb on + strand, within GFF3716 at 58.025 kb on + strand, within GFF3716 at 58.025 kb on + strand, within GFF3716 at 58.025 kb on + strand, within GFF3716 at 58.253 kb on + strand, within GFF3716 at 58.593 kb on - strand at 58.610 kb on + strand at 58.730 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 56,636 - -2.3 56,765 - +0.6 56,842 + GFF3714 0.11 +0.2 56,843 - GFF3714 0.11 +0.5 56,843 - GFF3714 0.11 -0.0 57,335 - -0.0 57,335 - -1.9 57,335 - -0.2 57,811 - GFF3716 0.22 +1.0 57,833 + GFF3716 0.25 -0.3 58,025 + GFF3716 0.49 -0.9 58,025 + GFF3716 0.49 -1.5 58,025 + GFF3716 0.49 +0.6 58,253 + GFF3716 0.77 +0.7 58,593 - +0.2 58,610 + -0.5 58,730 + -0.1
Or see this region's nucleotide sequence