Strain Fitness in Xanthobacter sp. DMC5 around GFF371

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF370 and GFF371 overlap by 4 nucleotidesGFF371 and GFF372 overlap by 1 nucleotides GFF370 - Bifunctional adenosylcobalamin biosynthesis protein CobP, at 383,078 to 383,698 GFF370 GFF371 - Corrinoid adenosyltransferase, at 383,695 to 384,327 GFF371 GFF372 - Cobyric acid synthase, at 384,327 to 385,781 GFF372 Position (kb) 383 384 385Strain fitness (log2 ratio) -2 -1 0 1at 382.716 kb on + strandat 382.867 kb on - strandat 383.025 kb on + strandat 383.026 kb on - strandat 383.158 kb on + strand, within GFF370

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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382,716 + -0.3
382,867 - +1.1
383,025 + -2.7
383,026 - -0.8
383,158 + GFF370 0.13 +0.7

Or see this region's nucleotide sequence