Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3700 and GFF3701 are separated by 12 nucleotides GFF3701 and GFF3702 are separated by 44 nucleotides GFF3702 and GFF3703 overlap by 4 nucleotides GFF3703 and GFF3704 overlap by 4 nucleotides
GFF3700 - hypothetical protein, at 43,211 to 44,230
GFF3700
GFF3701 - Cytochrome c2, at 44,243 to 44,635
GFF3701
GFF3702 - Formyltransferase/hydrolase complex Fhc subunit C, at 44,680 to 45,486
GFF3702
GFF3703 - Formyltransferase/hydrolase complex subunit D, at 45,483 to 46,415
GFF3703
GFF3704 - Formyltransferase/hydrolase complex Fhc subunit A, at 46,412 to 48,061
GFF3704
Position (kb) 44
45
46 Strain fitness (log2 ratio) -1
0
1 at 43.719 kb on - strand, within GFF3700 at 44.034 kb on + strand, within GFF3700 at 44.035 kb on - strand, within GFF3700 at 44.367 kb on + strand, within GFF3701 at 44.368 kb on - strand, within GFF3701 at 44.439 kb on + strand, within GFF3701 at 44.439 kb on + strand, within GFF3701 at 44.498 kb on + strand, within GFF3701 at 44.498 kb on + strand, within GFF3701 at 44.499 kb on - strand, within GFF3701 at 44.499 kb on - strand, within GFF3701 at 44.877 kb on - strand, within GFF3702 at 45.551 kb on - strand at 45.763 kb on + strand, within GFF3703 at 45.764 kb on - strand, within GFF3703 at 45.828 kb on + strand, within GFF3703 at 45.829 kb on - strand, within GFF3703
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 43,719 - GFF3700 0.50 -1.0 44,034 + GFF3700 0.81 +0.7 44,035 - GFF3700 0.81 -0.9 44,367 + GFF3701 0.32 +0.5 44,368 - GFF3701 0.32 -0.2 44,439 + GFF3701 0.50 -0.2 44,439 + GFF3701 0.50 -0.5 44,498 + GFF3701 0.65 -0.1 44,498 + GFF3701 0.65 +0.3 44,499 - GFF3701 0.65 +0.1 44,499 - GFF3701 0.65 -1.3 44,877 - GFF3702 0.24 +1.2 45,551 - +0.2 45,763 + GFF3703 0.30 -1.5 45,764 - GFF3703 0.30 -1.5 45,828 + GFF3703 0.37 -0.8 45,829 - GFF3703 0.37 +0.2
Or see this region's nucleotide sequence