Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3698 and GFF3699 are separated by 18 nucleotides GFF3699 and GFF3700 overlap by 4 nucleotides GFF3700 and GFF3701 are separated by 12 nucleotides GFF3701 and GFF3702 are separated by 44 nucleotides
GFF3698 - hypothetical protein, at 41,361 to 42,245
GFF3698
GFF3699 - hypothetical protein, at 42,264 to 43,214
GFF3699
GFF3700 - hypothetical protein, at 43,211 to 44,230
GFF3700
GFF3701 - Cytochrome c2, at 44,243 to 44,635
GFF3701
GFF3702 - Formyltransferase/hydrolase complex Fhc subunit C, at 44,680 to 45,486
GFF3702
Position (kb) 43
44
45 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 42.285 kb on + strand at 42.285 kb on + strand at 42.286 kb on - strand at 42.672 kb on - strand, within GFF3699 at 42.672 kb on - strand, within GFF3699 at 42.681 kb on + strand, within GFF3699 at 42.682 kb on - strand, within GFF3699 at 42.682 kb on - strand, within GFF3699 at 42.682 kb on - strand, within GFF3699 at 42.822 kb on + strand, within GFF3699 at 42.822 kb on + strand, within GFF3699 at 42.822 kb on + strand, within GFF3699 at 42.822 kb on + strand, within GFF3699 at 42.823 kb on - strand, within GFF3699 at 42.823 kb on - strand, within GFF3699 at 42.823 kb on - strand, within GFF3699 at 42.823 kb on - strand, within GFF3699 at 42.823 kb on - strand, within GFF3699 at 42.823 kb on - strand, within GFF3699 at 43.440 kb on + strand, within GFF3700 at 43.440 kb on + strand, within GFF3700 at 43.440 kb on + strand, within GFF3700 at 43.440 kb on + strand, within GFF3700 at 43.444 kb on + strand, within GFF3700 at 43.445 kb on - strand, within GFF3700 at 43.490 kb on + strand, within GFF3700 at 43.490 kb on + strand, within GFF3700 at 43.719 kb on - strand, within GFF3700 at 44.034 kb on + strand, within GFF3700 at 44.035 kb on - strand, within GFF3700 at 44.367 kb on + strand, within GFF3701 at 44.368 kb on - strand, within GFF3701 at 44.439 kb on + strand, within GFF3701 at 44.439 kb on + strand, within GFF3701 at 44.498 kb on + strand, within GFF3701 at 44.498 kb on + strand, within GFF3701 at 44.499 kb on - strand, within GFF3701 at 44.499 kb on - strand, within GFF3701 at 44.877 kb on - strand, within GFF3702
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 42,285 + -0.9 42,285 + -0.6 42,286 - -1.7 42,672 - GFF3699 0.43 -1.8 42,672 - GFF3699 0.43 -0.9 42,681 + GFF3699 0.44 -2.8 42,682 - GFF3699 0.44 -2.5 42,682 - GFF3699 0.44 -2.1 42,682 - GFF3699 0.44 +0.5 42,822 + GFF3699 0.59 -2.7 42,822 + GFF3699 0.59 -3.5 42,822 + GFF3699 0.59 -0.8 42,822 + GFF3699 0.59 -2.6 42,823 - GFF3699 0.59 -1.6 42,823 - GFF3699 0.59 -0.3 42,823 - GFF3699 0.59 -1.1 42,823 - GFF3699 0.59 -3.0 42,823 - GFF3699 0.59 -1.4 42,823 - GFF3699 0.59 -1.5 43,440 + GFF3700 0.22 -1.5 43,440 + GFF3700 0.22 -1.3 43,440 + GFF3700 0.22 -0.9 43,440 + GFF3700 0.22 +0.5 43,444 + GFF3700 0.23 -2.0 43,445 - GFF3700 0.23 -1.5 43,490 + GFF3700 0.27 -1.4 43,490 + GFF3700 0.27 -1.5 43,719 - GFF3700 0.50 -1.0 44,034 + GFF3700 0.81 +0.7 44,035 - GFF3700 0.81 -0.9 44,367 + GFF3701 0.32 +0.5 44,368 - GFF3701 0.32 -0.2 44,439 + GFF3701 0.50 -0.2 44,439 + GFF3701 0.50 -0.5 44,498 + GFF3701 0.65 -0.1 44,498 + GFF3701 0.65 +0.3 44,499 - GFF3701 0.65 +0.1 44,499 - GFF3701 0.65 -1.3 44,877 - GFF3702 0.24 +1.2
Or see this region's nucleotide sequence