Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3684 and GFF3685 overlap by 4 nucleotides GFF3685 and GFF3686 are separated by 42 nucleotides GFF3686 and GFF3687 are separated by 413 nucleotides
GFF3684 - Lactate utilization protein B, at 26,345 to 27,802
GFF3684
GFF3685 - Lactate utilization protein C, at 27,799 to 28,497
GFF3685
GFF3686 - hypothetical protein, at 28,540 to 28,677
GFF3686
GFF3687 - hypothetical protein, at 29,091 to 29,780
GFF3687
Position (kb) 28
29 Strain fitness (log2 ratio) -1
0
1
2
3 at 27.602 kb on + strand, within GFF3684 at 28.266 kb on - strand, within GFF3685 at 28.324 kb on + strand, within GFF3685 at 28.325 kb on - strand, within GFF3685 at 28.380 kb on + strand, within GFF3685 at 28.541 kb on + strand at 28.542 kb on - strand at 28.832 kb on - strand at 28.891 kb on - strand at 28.891 kb on - strand at 28.891 kb on - strand at 29.060 kb on - strand at 29.190 kb on + strand, within GFF3687 at 29.191 kb on - strand, within GFF3687 at 29.191 kb on - strand, within GFF3687 at 29.490 kb on + strand, within GFF3687 at 29.502 kb on + strand, within GFF3687 at 29.505 kb on + strand, within GFF3687 at 29.505 kb on + strand, within GFF3687 at 29.506 kb on - strand, within GFF3687 at 29.528 kb on + strand, within GFF3687 at 29.529 kb on - strand, within GFF3687
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 27,602 + GFF3684 0.86 -0.3 28,266 - GFF3685 0.67 -0.7 28,324 + GFF3685 0.75 -0.3 28,325 - GFF3685 0.75 -0.2 28,380 + GFF3685 0.83 -1.3 28,541 + -0.5 28,542 - +0.2 28,832 - -1.2 28,891 - +0.8 28,891 - -0.9 28,891 - +0.3 29,060 - +0.1 29,190 + GFF3687 0.14 +0.8 29,191 - GFF3687 0.14 +0.6 29,191 - GFF3687 0.14 +2.9 29,490 + GFF3687 0.58 +0.7 29,502 + GFF3687 0.60 -0.1 29,505 + GFF3687 0.60 +1.4 29,505 + GFF3687 0.60 +1.6 29,506 - GFF3687 0.60 -0.9 29,528 + GFF3687 0.63 +0.7 29,529 - GFF3687 0.63 +0.7
Or see this region's nucleotide sequence