Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3678 and GFF3679 are separated by 98 nucleotides GFF3679 and GFF3680 are separated by 24 nucleotides GFF3680 and GFF3681 are separated by 47 nucleotides
GFF3678 - Chromate transport protein, at 20,855 to 22,099
GFF3678
GFF3679 - hypothetical protein, at 22,198 to 23,514
GFF3679
GFF3680 - hypothetical protein, at 23,539 to 24,018
GFF3680
GFF3681 - Transcriptional regulatory protein WalR, at 24,066 to 24,752
GFF3681
Position (kb) 22
23
24 Strain fitness (log2 ratio) -1
0
1
2 at 21.198 kb on - strand, within GFF3678 at 21.522 kb on + strand, within GFF3678 at 21.569 kb on + strand, within GFF3678 at 21.569 kb on + strand, within GFF3678 at 21.569 kb on + strand, within GFF3678 at 21.571 kb on + strand, within GFF3678 at 21.572 kb on - strand, within GFF3678 at 21.572 kb on - strand, within GFF3678 at 21.593 kb on + strand, within GFF3678 at 21.593 kb on + strand, within GFF3678 at 21.594 kb on - strand, within GFF3678 at 21.594 kb on - strand, within GFF3678 at 21.594 kb on - strand, within GFF3678 at 21.594 kb on - strand, within GFF3678 at 21.837 kb on + strand, within GFF3678 at 21.838 kb on - strand, within GFF3678 at 21.947 kb on + strand, within GFF3678 at 21.947 kb on + strand, within GFF3678 at 21.948 kb on - strand, within GFF3678 at 23.422 kb on + strand at 23.422 kb on + strand at 23.422 kb on + strand at 23.423 kb on - strand at 23.423 kb on - strand at 23.423 kb on - strand at 23.425 kb on - strand at 23.861 kb on + strand, within GFF3680 at 23.862 kb on - strand, within GFF3680
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 21,198 - GFF3678 0.28 -1.0 21,522 + GFF3678 0.54 +0.4 21,569 + GFF3678 0.57 -1.0 21,569 + GFF3678 0.57 +0.4 21,569 + GFF3678 0.57 -1.1 21,571 + GFF3678 0.58 +0.3 21,572 - GFF3678 0.58 +1.0 21,572 - GFF3678 0.58 -0.9 21,593 + GFF3678 0.59 +1.6 21,593 + GFF3678 0.59 +1.2 21,594 - GFF3678 0.59 +0.7 21,594 - GFF3678 0.59 -0.2 21,594 - GFF3678 0.59 -0.0 21,594 - GFF3678 0.59 +0.2 21,837 + GFF3678 0.79 -0.3 21,838 - GFF3678 0.79 -1.6 21,947 + GFF3678 0.88 +0.2 21,947 + GFF3678 0.88 +0.5 21,948 - GFF3678 0.88 +0.1 23,422 + +1.0 23,422 + -0.5 23,422 + +0.2 23,423 - -1.6 23,423 - -0.5 23,423 - +2.1 23,425 - -1.0 23,861 + GFF3680 0.67 -0.1 23,862 - GFF3680 0.67 +0.2
Or see this region's nucleotide sequence