Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3675 and GFF3676 overlap by 4 nucleotides GFF3676 and GFF3677 are separated by 282 nucleotides
GFF3675 - C4-dicarboxylate transport transcriptional regulatory protein DctD, at 15,841 to 17,208
GFF3675
GFF3676 - C4-dicarboxylate transport sensor protein DctB, at 17,205 to 19,073
GFF3676
GFF3677 - C4-dicarboxylate transport protein, at 19,356 to 20,717
GFF3677
Position (kb) 17
18
19
20 Strain fitness (log2 ratio) -2
-1
0
1 at 16.298 kb on + strand, within GFF3675 at 16.298 kb on + strand, within GFF3675 at 16.886 kb on + strand, within GFF3675 at 16.887 kb on - strand, within GFF3675 at 16.908 kb on - strand, within GFF3675 at 17.358 kb on - strand at 18.557 kb on - strand, within GFF3676 at 18.628 kb on - strand, within GFF3676 at 18.647 kb on - strand, within GFF3676 at 18.647 kb on - strand, within GFF3676 at 18.721 kb on + strand, within GFF3676 at 18.721 kb on + strand, within GFF3676 at 18.721 kb on + strand, within GFF3676 at 18.721 kb on + strand, within GFF3676 at 18.721 kb on + strand, within GFF3676 at 18.721 kb on + strand, within GFF3676 at 18.722 kb on - strand, within GFF3676 at 18.952 kb on + strand at 18.952 kb on + strand at 18.952 kb on + strand at 18.953 kb on - strand at 19.411 kb on - strand at 19.411 kb on - strand at 19.411 kb on - strand at 19.411 kb on - strand at 19.411 kb on - strand at 19.422 kb on + strand at 19.632 kb on + strand, within GFF3677 at 19.632 kb on + strand, within GFF3677 at 19.632 kb on + strand, within GFF3677 at 19.632 kb on + strand, within GFF3677 at 19.632 kb on + strand, within GFF3677 at 19.633 kb on - strand, within GFF3677 at 19.633 kb on - strand, within GFF3677 at 19.633 kb on - strand, within GFF3677 at 19.715 kb on - strand, within GFF3677 at 19.752 kb on + strand, within GFF3677 at 19.752 kb on + strand, within GFF3677 at 19.752 kb on + strand, within GFF3677 at 19.752 kb on + strand, within GFF3677 at 19.752 kb on + strand, within GFF3677 at 19.752 kb on + strand, within GFF3677 at 20.025 kb on + strand, within GFF3677 at 20.025 kb on + strand, within GFF3677 at 20.025 kb on + strand, within GFF3677
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 16,298 + GFF3675 0.33 -0.0 16,298 + GFF3675 0.33 +0.1 16,886 + GFF3675 0.76 -0.3 16,887 - GFF3675 0.76 +0.4 16,908 - GFF3675 0.78 -0.3 17,358 - +0.2 18,557 - GFF3676 0.72 +1.3 18,628 - GFF3676 0.76 -0.5 18,647 - GFF3676 0.77 -0.5 18,647 - GFF3676 0.77 -0.7 18,721 + GFF3676 0.81 +0.2 18,721 + GFF3676 0.81 -2.0 18,721 + GFF3676 0.81 -0.2 18,721 + GFF3676 0.81 -1.0 18,721 + GFF3676 0.81 +1.3 18,721 + GFF3676 0.81 -0.4 18,722 - GFF3676 0.81 -0.9 18,952 + -0.6 18,952 + -0.3 18,952 + -0.9 18,953 - +0.2 19,411 - -1.3 19,411 - +0.7 19,411 - -1.9 19,411 - +1.3 19,411 - +0.9 19,422 + +0.1 19,632 + GFF3677 0.20 -0.3 19,632 + GFF3677 0.20 -0.3 19,632 + GFF3677 0.20 -0.1 19,632 + GFF3677 0.20 -0.5 19,632 + GFF3677 0.20 +0.9 19,633 - GFF3677 0.20 +0.9 19,633 - GFF3677 0.20 +1.3 19,633 - GFF3677 0.20 -0.3 19,715 - GFF3677 0.26 -0.4 19,752 + GFF3677 0.29 +0.3 19,752 + GFF3677 0.29 +0.3 19,752 + GFF3677 0.29 -0.6 19,752 + GFF3677 0.29 +0.0 19,752 + GFF3677 0.29 -0.3 19,752 + GFF3677 0.29 -0.6 20,025 + GFF3677 0.49 +0.0 20,025 + GFF3677 0.49 -0.6 20,025 + GFF3677 0.49 -0.9
Or see this region's nucleotide sequence