Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3674 and GFF3675 are separated by 203 nucleotides GFF3675 and GFF3676 overlap by 4 nucleotides
GFF3674 - hypothetical protein, at 14,795 to 15,637
GFF3674
GFF3675 - C4-dicarboxylate transport transcriptional regulatory protein DctD, at 15,841 to 17,208
GFF3675
GFF3676 - C4-dicarboxylate transport sensor protein DctB, at 17,205 to 19,073
GFF3676
Position (kb) 15
16
17
18 Strain fitness (log2 ratio) -1
0
1 at 14.985 kb on - strand, within GFF3674 at 15.014 kb on + strand, within GFF3674 at 15.014 kb on + strand, within GFF3674 at 15.014 kb on + strand, within GFF3674 at 15.014 kb on + strand, within GFF3674 at 15.015 kb on - strand, within GFF3674 at 15.015 kb on - strand, within GFF3674 at 15.131 kb on + strand, within GFF3674 at 15.131 kb on + strand, within GFF3674 at 15.131 kb on + strand, within GFF3674 at 15.131 kb on + strand, within GFF3674 at 15.131 kb on + strand, within GFF3674 at 15.132 kb on - strand, within GFF3674 at 15.132 kb on - strand, within GFF3674 at 15.132 kb on - strand, within GFF3674 at 15.159 kb on - strand, within GFF3674 at 15.363 kb on - strand, within GFF3674 at 15.569 kb on + strand at 15.908 kb on + strand at 16.103 kb on + strand, within GFF3675 at 16.103 kb on + strand, within GFF3675 at 16.103 kb on + strand, within GFF3675 at 16.104 kb on - strand, within GFF3675 at 16.298 kb on + strand, within GFF3675 at 16.298 kb on + strand, within GFF3675 at 16.886 kb on + strand, within GFF3675 at 16.887 kb on - strand, within GFF3675 at 16.908 kb on - strand, within GFF3675 at 17.358 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 14,985 - GFF3674 0.23 -0.4 15,014 + GFF3674 0.26 +0.2 15,014 + GFF3674 0.26 +0.7 15,014 + GFF3674 0.26 -0.7 15,014 + GFF3674 0.26 +1.2 15,015 - GFF3674 0.26 -0.6 15,015 - GFF3674 0.26 -0.8 15,131 + GFF3674 0.40 -0.1 15,131 + GFF3674 0.40 -1.2 15,131 + GFF3674 0.40 -0.4 15,131 + GFF3674 0.40 -0.3 15,131 + GFF3674 0.40 -1.7 15,132 - GFF3674 0.40 +0.5 15,132 - GFF3674 0.40 +0.7 15,132 - GFF3674 0.40 +0.5 15,159 - GFF3674 0.43 +0.3 15,363 - GFF3674 0.67 +0.3 15,569 + -1.0 15,908 + +0.8 16,103 + GFF3675 0.19 -0.2 16,103 + GFF3675 0.19 -0.5 16,103 + GFF3675 0.19 -0.7 16,104 - GFF3675 0.19 -0.5 16,298 + GFF3675 0.33 -0.0 16,298 + GFF3675 0.33 +0.1 16,886 + GFF3675 0.76 -0.3 16,887 - GFF3675 0.76 +0.4 16,908 - GFF3675 0.78 -0.3 17,358 - +0.2
Or see this region's nucleotide sequence