Strain Fitness in Xanthobacter sp. DMC5 around GFF367

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF365 and GFF366 are separated by 242 nucleotidesGFF366 and GFF367 are separated by 100 nucleotidesGFF367 and GFF368 overlap by 4 nucleotides GFF365 - hypothetical protein, at 377,814 to 378,356 GFF365 GFF366 - hypothetical protein, at 378,599 to 379,072 GFF366 GFF367 - ADP-heptose--LPS heptosyltransferase 2, at 379,173 to 380,195 GFF367 GFF368 - Lipopolysaccharide heptosyltransferase 1, at 380,192 to 381,202 GFF368 Position (kb) 379 380 381Strain fitness (log2 ratio) -3 -2 -1 0 1at 378.364 kb on - strandat 378.364 kb on - strandat 378.452 kb on + strandat 378.453 kb on - strandat 378.454 kb on + strandat 378.557 kb on - strandat 378.557 kb on - strandat 378.624 kb on - strandat 378.624 kb on - strandat 378.743 kb on + strand, within GFF366at 378.835 kb on + strand, within GFF366at 378.835 kb on + strand, within GFF366at 378.882 kb on - strand, within GFF366

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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378,364 - -0.6
378,364 - +0.2
378,452 + -1.0
378,453 - -1.0
378,454 + -0.1
378,557 - +0.6
378,557 - -1.9
378,624 - +0.4
378,624 - +0.4
378,743 + GFF366 0.30 -1.3
378,835 + GFF366 0.50 -0.2
378,835 + GFF366 0.50 -2.8
378,882 - GFF366 0.60 +1.0

Or see this region's nucleotide sequence