Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3658 and GFF3659 are separated by 308 nucleotides GFF3659 and GFF3660 are separated by 63 nucleotides GFF3660 and GFF3661 are separated by 315 nucleotides
GFF3658 - hypothetical protein, at 523,676 to 523,843
GFF3658
GFF3659 - hypothetical protein, at 524,152 to 524,520
GFF3659
GFF3660 - hypothetical protein, at 524,584 to 525,504
GFF3660
GFF3661 - hypothetical protein, at 525,820 to 526,866
GFF3661
Position (kb) 524
525
526 Strain fitness (log2 ratio) -2
-1
0
1
2 at 523.610 kb on + strand at 523.619 kb on + strand at 523.619 kb on + strand at 523.619 kb on + strand at 523.619 kb on + strand at 523.620 kb on - strand at 524.085 kb on + strand at 524.086 kb on - strand at 524.086 kb on - strand at 524.086 kb on - strand at 524.086 kb on - strand at 524.158 kb on + strand at 524.158 kb on + strand at 524.159 kb on - strand at 524.159 kb on - strand at 524.159 kb on - strand at 524.159 kb on - strand at 524.159 kb on - strand at 524.168 kb on + strand at 524.320 kb on + strand, within GFF3659 at 524.320 kb on + strand, within GFF3659 at 524.321 kb on - strand, within GFF3659 at 524.321 kb on - strand, within GFF3659 at 524.321 kb on - strand, within GFF3659 at 524.362 kb on + strand, within GFF3659 at 524.363 kb on - strand, within GFF3659 at 524.363 kb on - strand, within GFF3659 at 524.437 kb on + strand, within GFF3659 at 524.437 kb on + strand, within GFF3659 at 524.437 kb on + strand, within GFF3659 at 524.438 kb on - strand, within GFF3659 at 524.440 kb on - strand, within GFF3659 at 524.518 kb on + strand at 524.863 kb on + strand, within GFF3660 at 524.863 kb on + strand, within GFF3660 at 524.863 kb on + strand, within GFF3660 at 524.864 kb on - strand, within GFF3660 at 524.864 kb on - strand, within GFF3660 at 525.077 kb on + strand, within GFF3660 at 525.352 kb on - strand, within GFF3660 at 525.425 kb on + strand at 525.426 kb on - strand at 525.443 kb on + strand at 525.583 kb on + strand at 525.583 kb on + strand at 525.584 kb on - strand at 525.584 kb on - strand at 525.784 kb on + strand at 525.785 kb on - strand at 525.821 kb on + strand at 525.821 kb on + strand at 525.821 kb on + strand at 525.874 kb on + strand at 525.874 kb on + strand at 525.874 kb on + strand at 525.874 kb on + strand at 525.874 kb on + strand at 525.874 kb on + strand at 525.874 kb on + strand at 525.874 kb on + strand at 525.875 kb on - strand at 525.875 kb on - strand at 525.880 kb on + strand at 525.880 kb on + strand at 525.880 kb on + strand at 525.881 kb on - strand at 525.881 kb on - strand at 525.881 kb on - strand at 525.985 kb on + strand, within GFF3661 at 526.032 kb on + strand, within GFF3661 at 526.032 kb on + strand, within GFF3661 at 526.032 kb on + strand, within GFF3661 at 526.033 kb on - strand, within GFF3661 at 526.033 kb on - strand, within GFF3661 at 526.033 kb on - strand, within GFF3661 at 526.033 kb on - strand, within GFF3661 at 526.034 kb on + strand, within GFF3661 at 526.035 kb on - strand, within GFF3661 at 526.035 kb on - strand, within GFF3661 at 526.379 kb on + strand, within GFF3661 at 526.379 kb on + strand, within GFF3661 at 526.380 kb on - strand, within GFF3661 at 526.382 kb on + strand, within GFF3661 at 526.382 kb on + strand, within GFF3661 at 526.383 kb on - strand, within GFF3661 at 526.383 kb on - strand, within GFF3661 at 526.448 kb on + strand, within GFF3661 at 526.448 kb on + strand, within GFF3661
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 523,610 + +0.2 523,619 + -1.3 523,619 + +0.2 523,619 + -0.5 523,619 + +0.7 523,620 - +0.1 524,085 + -0.5 524,086 - +0.5 524,086 - +0.3 524,086 - -0.5 524,086 - -0.4 524,158 + -0.6 524,158 + -0.5 524,159 - +0.8 524,159 - +0.5 524,159 - -0.5 524,159 - +1.3 524,159 - +0.3 524,168 + +1.4 524,320 + GFF3659 0.46 -1.3 524,320 + GFF3659 0.46 -1.0 524,321 - GFF3659 0.46 +0.0 524,321 - GFF3659 0.46 -1.5 524,321 - GFF3659 0.46 +0.0 524,362 + GFF3659 0.57 -0.1 524,363 - GFF3659 0.57 +0.3 524,363 - GFF3659 0.57 -1.3 524,437 + GFF3659 0.77 +0.0 524,437 + GFF3659 0.77 -0.6 524,437 + GFF3659 0.77 +0.8 524,438 - GFF3659 0.78 +0.3 524,440 - GFF3659 0.78 +0.9 524,518 + -0.6 524,863 + GFF3660 0.30 -0.5 524,863 + GFF3660 0.30 -0.3 524,863 + GFF3660 0.30 -0.6 524,864 - GFF3660 0.30 -2.0 524,864 - GFF3660 0.30 +0.6 525,077 + GFF3660 0.54 -1.6 525,352 - GFF3660 0.83 +0.9 525,425 + +1.9 525,426 - -0.8 525,443 + +0.2 525,583 + -0.5 525,583 + -0.1 525,584 - -0.4 525,584 - -2.5 525,784 + +0.5 525,785 - +0.3 525,821 + -0.2 525,821 + +0.1 525,821 + -1.5 525,874 + +0.4 525,874 + -0.6 525,874 + +0.1 525,874 + -0.3 525,874 + -1.3 525,874 + +0.4 525,874 + -1.1 525,874 + -0.7 525,875 - +0.2 525,875 - +0.2 525,880 + +0.7 525,880 + +0.4 525,880 + -1.2 525,881 - -1.2 525,881 - +0.3 525,881 - -1.2 525,985 + GFF3661 0.16 -0.3 526,032 + GFF3661 0.20 +0.4 526,032 + GFF3661 0.20 -1.3 526,032 + GFF3661 0.20 +0.8 526,033 - GFF3661 0.20 -0.2 526,033 - GFF3661 0.20 -0.5 526,033 - GFF3661 0.20 +1.3 526,033 - GFF3661 0.20 +0.0 526,034 + GFF3661 0.20 +1.0 526,035 - GFF3661 0.21 -0.9 526,035 - GFF3661 0.21 -0.4 526,379 + GFF3661 0.53 +0.2 526,379 + GFF3661 0.53 -0.1 526,380 - GFF3661 0.53 -0.7 526,382 + GFF3661 0.54 -1.3 526,382 + GFF3661 0.54 -0.9 526,383 - GFF3661 0.54 +0.5 526,383 - GFF3661 0.54 +0.5 526,448 + GFF3661 0.60 +0.7 526,448 + GFF3661 0.60 +0.4
Or see this region's nucleotide sequence