Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3648 and GFF3649 overlap by 4 nucleotides GFF3649 and GFF3650 overlap by 4 nucleotides GFF3650 and GFF3651 overlap by 4 nucleotides GFF3651 and GFF3652 overlap by 4 nucleotides
GFF3648 - hypothetical protein, at 516,993 to 517,538
GFF3648
GFF3649 - hypothetical protein, at 517,535 to 518,065
GFF3649
GFF3650 - hypothetical protein, at 518,062 to 518,313
GFF3650
GFF3651 - Chromosome-partitioning ATPase Soj, at 518,310 to 518,963
GFF3651
GFF3652 - hypothetical protein, at 518,960 to 520,114
GFF3652
Position (kb) 518
519 Strain fitness (log2 ratio) -2
-1
0
1
2 at 517.097 kb on - strand, within GFF3648 at 517.222 kb on + strand, within GFF3648 at 517.222 kb on + strand, within GFF3648 at 517.223 kb on - strand, within GFF3648 at 517.223 kb on - strand, within GFF3648 at 517.319 kb on + strand, within GFF3648 at 517.319 kb on + strand, within GFF3648 at 517.320 kb on - strand, within GFF3648 at 517.320 kb on - strand, within GFF3648 at 517.321 kb on + strand, within GFF3648 at 517.321 kb on + strand, within GFF3648 at 517.322 kb on - strand, within GFF3648 at 517.322 kb on - strand, within GFF3648 at 517.414 kb on + strand, within GFF3648 at 517.415 kb on - strand, within GFF3648 at 517.415 kb on - strand, within GFF3648 at 517.507 kb on + strand at 517.507 kb on + strand at 517.507 kb on + strand at 517.600 kb on + strand, within GFF3649 at 517.601 kb on - strand, within GFF3649 at 517.601 kb on - strand, within GFF3649 at 517.601 kb on - strand, within GFF3649 at 517.601 kb on - strand, within GFF3649 at 518.316 kb on + strand at 518.316 kb on + strand at 518.316 kb on + strand at 518.326 kb on + strand at 518.343 kb on + strand at 519.064 kb on + strand at 519.064 kb on + strand at 519.134 kb on - strand, within GFF3652 at 519.146 kb on + strand, within GFF3652 at 519.151 kb on + strand, within GFF3652 at 519.151 kb on + strand, within GFF3652 at 519.152 kb on - strand, within GFF3652 at 519.163 kb on + strand, within GFF3652 at 519.164 kb on - strand, within GFF3652
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 517,097 - GFF3648 0.19 -0.2 517,222 + GFF3648 0.42 +0.6 517,222 + GFF3648 0.42 -1.8 517,223 - GFF3648 0.42 +0.6 517,223 - GFF3648 0.42 +1.0 517,319 + GFF3648 0.60 -0.5 517,319 + GFF3648 0.60 +0.7 517,320 - GFF3648 0.60 +0.6 517,320 - GFF3648 0.60 +0.5 517,321 + GFF3648 0.60 -0.6 517,321 + GFF3648 0.60 -0.2 517,322 - GFF3648 0.60 +2.0 517,322 - GFF3648 0.60 +1.7 517,414 + GFF3648 0.77 -0.5 517,415 - GFF3648 0.77 +0.7 517,415 - GFF3648 0.77 +0.7 517,507 + +0.7 517,507 + -1.3 517,507 + +0.2 517,600 + GFF3649 0.12 -0.4 517,601 - GFF3649 0.12 +0.5 517,601 - GFF3649 0.12 -0.0 517,601 - GFF3649 0.12 -0.9 517,601 - GFF3649 0.12 -0.7 518,316 + +0.2 518,316 + +1.4 518,316 + -0.7 518,326 + -0.7 518,343 + -0.4 519,064 + -0.3 519,064 + -0.1 519,134 - GFF3652 0.15 +0.1 519,146 + GFF3652 0.16 +0.4 519,151 + GFF3652 0.17 -0.4 519,151 + GFF3652 0.17 -0.8 519,152 - GFF3652 0.17 -0.4 519,163 + GFF3652 0.18 +0.6 519,164 - GFF3652 0.18 -1.4
Or see this region's nucleotide sequence