Strain Fitness in Xanthobacter sp. DMC5 around GFF3647

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3646 and GFF3647 are separated by 243 nucleotidesGFF3647 and GFF3648 are separated by 42 nucleotidesGFF3648 and GFF3649 overlap by 4 nucleotides GFF3646 - hypothetical protein, at 514,191 to 515,930 GFF3646 GFF3647 - hypothetical protein, at 516,174 to 516,950 GFF3647 GFF3648 - hypothetical protein, at 516,993 to 517,538 GFF3648 GFF3649 - hypothetical protein, at 517,535 to 518,065 GFF3649 Position (kb) 516 517Strain fitness (log2 ratio) -2 -1 0 1 2at 515.244 kb on - strand, within GFF3646at 515.316 kb on - strand, within GFF3646at 515.316 kb on - strand, within GFF3646at 515.316 kb on - strand, within GFF3646at 515.317 kb on + strand, within GFF3646at 515.318 kb on - strand, within GFF3646at 515.642 kb on - strand, within GFF3646at 515.642 kb on - strand, within GFF3646at 515.646 kb on + strand, within GFF3646at 515.646 kb on + strand, within GFF3646at 515.646 kb on + strand, within GFF3646at 515.646 kb on + strand, within GFF3646at 515.647 kb on - strand, within GFF3646at 515.647 kb on - strand, within GFF3646at 515.647 kb on - strand, within GFF3646at 515.647 kb on - strand, within GFF3646at 515.647 kb on - strand, within GFF3646at 515.647 kb on - strand, within GFF3646at 515.647 kb on - strand, within GFF3646at 515.647 kb on - strand, within GFF3646at 515.647 kb on - strand, within GFF3646at 515.647 kb on - strand, within GFF3646at 515.948 kb on + strandat 516.078 kb on + strandat 516.078 kb on + strandat 516.149 kb on - strandat 516.433 kb on + strand, within GFF3647at 516.433 kb on + strand, within GFF3647at 516.433 kb on + strand, within GFF3647at 516.433 kb on + strand, within GFF3647at 516.434 kb on - strand, within GFF3647at 516.497 kb on + strand, within GFF3647at 516.498 kb on - strand, within GFF3647at 516.502 kb on + strand, within GFF3647at 516.503 kb on - strand, within GFF3647at 516.503 kb on - strand, within GFF3647at 516.503 kb on - strand, within GFF3647at 516.503 kb on - strand, within GFF3647at 516.529 kb on + strand, within GFF3647at 516.554 kb on - strand, within GFF3647at 516.589 kb on + strand, within GFF3647at 516.589 kb on + strand, within GFF3647at 516.610 kb on + strand, within GFF3647at 516.611 kb on - strand, within GFF3647at 516.714 kb on + strand, within GFF3647at 516.714 kb on + strand, within GFF3647at 516.714 kb on + strand, within GFF3647at 516.715 kb on - strand, within GFF3647at 516.715 kb on - strand, within GFF3647at 516.738 kb on + strand, within GFF3647at 516.738 kb on + strand, within GFF3647at 516.738 kb on + strand, within GFF3647at 516.779 kb on - strand, within GFF3647at 517.045 kb on + strandat 517.045 kb on + strandat 517.097 kb on - strand, within GFF3648at 517.222 kb on + strand, within GFF3648at 517.222 kb on + strand, within GFF3648at 517.223 kb on - strand, within GFF3648at 517.223 kb on - strand, within GFF3648at 517.319 kb on + strand, within GFF3648at 517.319 kb on + strand, within GFF3648at 517.320 kb on - strand, within GFF3648at 517.320 kb on - strand, within GFF3648at 517.321 kb on + strand, within GFF3648at 517.321 kb on + strand, within GFF3648at 517.322 kb on - strand, within GFF3648at 517.322 kb on - strand, within GFF3648at 517.414 kb on + strand, within GFF3648at 517.415 kb on - strand, within GFF3648at 517.415 kb on - strand, within GFF3648at 517.507 kb on + strandat 517.507 kb on + strandat 517.507 kb on + strandat 517.600 kb on + strand, within GFF3649at 517.601 kb on - strand, within GFF3649at 517.601 kb on - strand, within GFF3649at 517.601 kb on - strand, within GFF3649at 517.601 kb on - strand, within GFF3649

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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515,244 - GFF3646 0.61 -0.1
515,316 - GFF3646 0.65 +0.2
515,316 - GFF3646 0.65 -0.5
515,316 - GFF3646 0.65 +1.3
515,317 + GFF3646 0.65 -0.5
515,318 - GFF3646 0.65 -0.5
515,642 - GFF3646 0.83 -1.5
515,642 - GFF3646 0.83 -1.0
515,646 + GFF3646 0.84 -0.5
515,646 + GFF3646 0.84 -1.2
515,646 + GFF3646 0.84 -1.1
515,646 + GFF3646 0.84 -0.2
515,647 - GFF3646 0.84 +0.0
515,647 - GFF3646 0.84 -0.4
515,647 - GFF3646 0.84 +0.5
515,647 - GFF3646 0.84 -0.2
515,647 - GFF3646 0.84 +0.1
515,647 - GFF3646 0.84 -1.3
515,647 - GFF3646 0.84 +1.3
515,647 - GFF3646 0.84 +0.8
515,647 - GFF3646 0.84 -0.7
515,647 - GFF3646 0.84 -0.8
515,948 + -0.5
516,078 + -0.1
516,078 + +0.3
516,149 - +0.7
516,433 + GFF3647 0.33 +0.3
516,433 + GFF3647 0.33 -1.8
516,433 + GFF3647 0.33 +1.3
516,433 + GFF3647 0.33 -0.9
516,434 - GFF3647 0.33 +0.7
516,497 + GFF3647 0.42 -0.2
516,498 - GFF3647 0.42 +0.2
516,502 + GFF3647 0.42 -1.2
516,503 - GFF3647 0.42 -0.3
516,503 - GFF3647 0.42 +0.2
516,503 - GFF3647 0.42 -0.7
516,503 - GFF3647 0.42 +0.5
516,529 + GFF3647 0.46 +0.9
516,554 - GFF3647 0.49 -0.6
516,589 + GFF3647 0.53 +1.7
516,589 + GFF3647 0.53 -1.9
516,610 + GFF3647 0.56 +0.4
516,611 - GFF3647 0.56 +0.1
516,714 + GFF3647 0.69 +0.1
516,714 + GFF3647 0.69 +0.1
516,714 + GFF3647 0.69 +0.3
516,715 - GFF3647 0.70 +0.2
516,715 - GFF3647 0.70 -0.0
516,738 + GFF3647 0.73 -0.5
516,738 + GFF3647 0.73 +0.9
516,738 + GFF3647 0.73 +0.4
516,779 - GFF3647 0.78 +1.6
517,045 + +0.2
517,045 + -0.5
517,097 - GFF3648 0.19 -0.2
517,222 + GFF3648 0.42 +0.6
517,222 + GFF3648 0.42 -1.8
517,223 - GFF3648 0.42 +0.6
517,223 - GFF3648 0.42 +1.0
517,319 + GFF3648 0.60 -0.5
517,319 + GFF3648 0.60 +0.7
517,320 - GFF3648 0.60 +0.6
517,320 - GFF3648 0.60 +0.5
517,321 + GFF3648 0.60 -0.6
517,321 + GFF3648 0.60 -0.2
517,322 - GFF3648 0.60 +2.0
517,322 - GFF3648 0.60 +1.7
517,414 + GFF3648 0.77 -0.5
517,415 - GFF3648 0.77 +0.7
517,415 - GFF3648 0.77 +0.7
517,507 + +0.7
517,507 + -1.3
517,507 + +0.2
517,600 + GFF3649 0.12 -0.4
517,601 - GFF3649 0.12 +0.5
517,601 - GFF3649 0.12 -0.0
517,601 - GFF3649 0.12 -0.9
517,601 - GFF3649 0.12 -0.7

Or see this region's nucleotide sequence