Strain Fitness in Xanthobacter sp. DMC5 around GFF3638

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3635 and GFF3636 are separated by 12 nucleotidesGFF3636 and GFF3637 overlap by 1 nucleotidesGFF3637 and GFF3638 overlap by 1 nucleotidesGFF3638 and GFF3639 are separated by 249 nucleotides GFF3635 - Type IV secretion system protein virB4, at 498,415 to 500,844 GFF3635 GFF3636 - hypothetical protein, at 500,857 to 501,129 GFF3636 GFF3637 - hypothetical protein, at 501,129 to 501,458 GFF3637 GFF3638 - hypothetical protein, at 501,458 to 502,444 GFF3638 GFF3639 - IS1182 family transposase ISGdi16, at 502,694 to 504,070 GFF3639 Position (kb) 501 502 503Strain fitness (log2 ratio) -2 -1 0 1 2 3at 500.490 kb on - strand, within GFF3635at 500.490 kb on - strand, within GFF3635at 500.585 kb on + strand, within GFF3635at 500.585 kb on + strand, within GFF3635at 500.598 kb on + strand, within GFF3635at 500.598 kb on + strand, within GFF3635at 500.598 kb on + strand, within GFF3635at 500.742 kb on + strandat 500.742 kb on + strandat 500.742 kb on + strandat 500.742 kb on + strandat 500.743 kb on - strandat 500.743 kb on - strandat 500.743 kb on - strandat 500.795 kb on + strandat 500.795 kb on + strandat 500.795 kb on + strandat 500.796 kb on - strandat 500.796 kb on - strandat 500.796 kb on - strandat 500.825 kb on + strandat 500.825 kb on + strandat 500.825 kb on + strandat 500.825 kb on + strandat 501.274 kb on - strand, within GFF3637at 501.274 kb on - strand, within GFF3637at 501.392 kb on - strand, within GFF3637at 501.507 kb on + strandat 501.507 kb on + strandat 501.674 kb on + strand, within GFF3638at 501.674 kb on + strand, within GFF3638at 501.674 kb on + strand, within GFF3638at 501.675 kb on - strand, within GFF3638at 501.915 kb on + strand, within GFF3638at 501.915 kb on + strand, within GFF3638at 501.916 kb on - strand, within GFF3638at 501.916 kb on - strand, within GFF3638at 501.916 kb on - strand, within GFF3638at 501.922 kb on + strand, within GFF3638at 501.922 kb on + strand, within GFF3638at 501.922 kb on + strand, within GFF3638at 501.923 kb on - strand, within GFF3638at 502.009 kb on + strand, within GFF3638at 502.010 kb on - strand, within GFF3638at 502.010 kb on - strand, within GFF3638at 502.010 kb on - strand, within GFF3638at 502.063 kb on - strand, within GFF3638at 502.063 kb on - strand, within GFF3638at 502.213 kb on + strand, within GFF3638at 502.214 kb on - strand, within GFF3638at 502.214 kb on - strand, within GFF3638at 502.233 kb on - strand, within GFF3638at 502.444 kb on + strandat 502.444 kb on + strandat 502.445 kb on - strandat 502.445 kb on - strandat 502.445 kb on - strandat 502.445 kb on - strandat 502.498 kb on + strandat 502.498 kb on + strandat 502.509 kb on + strandat 502.566 kb on + strandat 502.607 kb on + strandat 502.702 kb on + strandat 502.808 kb on + strandat 502.887 kb on + strand, within GFF3639at 502.887 kb on + strand, within GFF3639at 502.887 kb on + strand, within GFF3639at 502.887 kb on + strand, within GFF3639at 502.887 kb on + strand, within GFF3639at 502.887 kb on + strand, within GFF3639at 502.887 kb on + strand, within GFF3639at 502.887 kb on + strand, within GFF3639at 502.887 kb on + strand, within GFF3639at 502.888 kb on - strand, within GFF3639at 502.888 kb on - strand, within GFF3639at 502.888 kb on - strand, within GFF3639at 502.888 kb on - strand, within GFF3639at 502.888 kb on - strand, within GFF3639at 502.888 kb on - strand, within GFF3639at 502.982 kb on - strand, within GFF3639at 502.982 kb on - strand, within GFF3639at 503.025 kb on + strand, within GFF3639at 503.026 kb on - strand, within GFF3639at 503.082 kb on + strand, within GFF3639at 503.115 kb on + strand, within GFF3639at 503.115 kb on + strand, within GFF3639at 503.115 kb on + strand, within GFF3639at 503.115 kb on + strand, within GFF3639at 503.115 kb on + strand, within GFF3639at 503.115 kb on + strand, within GFF3639at 503.115 kb on + strand, within GFF3639at 503.115 kb on + strand, within GFF3639at 503.115 kb on + strand, within GFF3639at 503.115 kb on + strand, within GFF3639at 503.115 kb on + strand, within GFF3639at 503.115 kb on + strand, within GFF3639at 503.115 kb on + strand, within GFF3639at 503.116 kb on - strand, within GFF3639at 503.116 kb on - strand, within GFF3639at 503.116 kb on - strand, within GFF3639at 503.116 kb on - strand, within GFF3639at 503.116 kb on - strand, within GFF3639at 503.116 kb on - strand, within GFF3639at 503.136 kb on + strand, within GFF3639at 503.136 kb on + strand, within GFF3639at 503.137 kb on - strand, within GFF3639at 503.253 kb on + strand, within GFF3639at 503.254 kb on - strand, within GFF3639at 503.403 kb on + strand, within GFF3639at 503.403 kb on + strand, within GFF3639at 503.404 kb on - strand, within GFF3639at 503.415 kb on + strand, within GFF3639at 503.416 kb on - strand, within GFF3639

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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500,490 - GFF3635 0.85 +0.1
500,490 - GFF3635 0.85 +0.5
500,585 + GFF3635 0.89 +0.5
500,585 + GFF3635 0.89 -0.7
500,598 + GFF3635 0.90 +1.5
500,598 + GFF3635 0.90 -1.6
500,598 + GFF3635 0.90 -0.3
500,742 + +0.8
500,742 + -0.0
500,742 + -1.6
500,742 + +0.1
500,743 - +1.0
500,743 - -0.4
500,743 - -0.2
500,795 + -0.2
500,795 + +0.1
500,795 + -0.7
500,796 - +0.2
500,796 - -0.9
500,796 - +2.0
500,825 + -0.2
500,825 + -0.1
500,825 + +0.1
500,825 + +0.7
501,274 - GFF3637 0.44 +2.1
501,274 - GFF3637 0.44 +1.2
501,392 - GFF3637 0.80 -1.2
501,507 + +0.5
501,507 + +0.9
501,674 + GFF3638 0.22 -0.6
501,674 + GFF3638 0.22 -0.1
501,674 + GFF3638 0.22 -1.4
501,675 - GFF3638 0.22 +3.3
501,915 + GFF3638 0.46 -1.5
501,915 + GFF3638 0.46 +0.0
501,916 - GFF3638 0.46 +1.3
501,916 - GFF3638 0.46 -0.3
501,916 - GFF3638 0.46 -0.6
501,922 + GFF3638 0.47 +0.4
501,922 + GFF3638 0.47 -1.4
501,922 + GFF3638 0.47 -0.2
501,923 - GFF3638 0.47 +0.7
502,009 + GFF3638 0.56 +0.4
502,010 - GFF3638 0.56 +0.8
502,010 - GFF3638 0.56 +0.7
502,010 - GFF3638 0.56 +1.0
502,063 - GFF3638 0.61 +0.3
502,063 - GFF3638 0.61 -0.4
502,213 + GFF3638 0.76 +0.9
502,214 - GFF3638 0.77 +0.9
502,214 - GFF3638 0.77 -0.1
502,233 - GFF3638 0.79 -1.1
502,444 + -0.4
502,444 + -0.4
502,445 - -0.9
502,445 - +0.5
502,445 - -0.6
502,445 - -0.1
502,498 + -1.2
502,498 + +0.4
502,509 + -1.6
502,566 + -0.7
502,607 + -0.6
502,702 + +0.9
502,808 + +0.4
502,887 + GFF3639 0.14 +1.0
502,887 + GFF3639 0.14 +1.3
502,887 + GFF3639 0.14 -0.5
502,887 + GFF3639 0.14 +0.3
502,887 + GFF3639 0.14 +0.1
502,887 + GFF3639 0.14 -0.4
502,887 + GFF3639 0.14 +0.1
502,887 + GFF3639 0.14 -1.5
502,887 + GFF3639 0.14 +0.5
502,888 - GFF3639 0.14 +0.9
502,888 - GFF3639 0.14 +0.6
502,888 - GFF3639 0.14 +0.3
502,888 - GFF3639 0.14 -0.2
502,888 - GFF3639 0.14 -0.6
502,888 - GFF3639 0.14 +0.1
502,982 - GFF3639 0.21 -0.5
502,982 - GFF3639 0.21 -0.3
503,025 + GFF3639 0.24 +0.4
503,026 - GFF3639 0.24 +0.1
503,082 + GFF3639 0.28 +0.1
503,115 + GFF3639 0.31 +0.8
503,115 + GFF3639 0.31 +0.3
503,115 + GFF3639 0.31 -0.5
503,115 + GFF3639 0.31 +0.6
503,115 + GFF3639 0.31 -1.9
503,115 + GFF3639 0.31 -0.0
503,115 + GFF3639 0.31 +0.2
503,115 + GFF3639 0.31 -0.7
503,115 + GFF3639 0.31 -0.7
503,115 + GFF3639 0.31 -1.4
503,115 + GFF3639 0.31 +2.9
503,115 + GFF3639 0.31 -0.1
503,115 + GFF3639 0.31 -1.2
503,116 - GFF3639 0.31 +1.3
503,116 - GFF3639 0.31 -0.3
503,116 - GFF3639 0.31 -1.0
503,116 - GFF3639 0.31 +0.3
503,116 - GFF3639 0.31 +1.4
503,116 - GFF3639 0.31 +0.2
503,136 + GFF3639 0.32 +0.4
503,136 + GFF3639 0.32 +1.2
503,137 - GFF3639 0.32 -0.0
503,253 + GFF3639 0.41 +0.3
503,254 - GFF3639 0.41 +1.6
503,403 + GFF3639 0.51 +0.3
503,403 + GFF3639 0.51 +0.3
503,404 - GFF3639 0.52 +0.3
503,415 + GFF3639 0.52 -0.1
503,416 - GFF3639 0.52 +0.3

Or see this region's nucleotide sequence