Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3635 and GFF3636 are separated by 12 nucleotides GFF3636 and GFF3637 overlap by 1 nucleotides GFF3637 and GFF3638 overlap by 1 nucleotides
GFF3635 - Type IV secretion system protein virB4, at 498,415 to 500,844
GFF3635
GFF3636 - hypothetical protein, at 500,857 to 501,129
GFF3636
GFF3637 - hypothetical protein, at 501,129 to 501,458
GFF3637
GFF3638 - hypothetical protein, at 501,458 to 502,444
GFF3638
Position (kb) 500
501
502 Strain fitness (log2 ratio) -1
0
1
2
3 at 500.019 kb on - strand, within GFF3635 at 500.229 kb on - strand, within GFF3635 at 500.229 kb on - strand, within GFF3635 at 500.229 kb on - strand, within GFF3635 at 500.229 kb on - strand, within GFF3635 at 500.229 kb on - strand, within GFF3635 at 500.232 kb on + strand, within GFF3635 at 500.232 kb on + strand, within GFF3635 at 500.232 kb on + strand, within GFF3635 at 500.232 kb on + strand, within GFF3635 at 500.233 kb on - strand, within GFF3635 at 500.233 kb on - strand, within GFF3635 at 500.233 kb on - strand, within GFF3635 at 500.233 kb on - strand, within GFF3635 at 500.233 kb on - strand, within GFF3635 at 500.233 kb on - strand, within GFF3635 at 500.233 kb on - strand, within GFF3635 at 500.288 kb on + strand, within GFF3635 at 500.289 kb on - strand, within GFF3635 at 500.289 kb on - strand, within GFF3635 at 500.289 kb on - strand, within GFF3635 at 500.299 kb on - strand, within GFF3635 at 500.426 kb on + strand, within GFF3635 at 500.427 kb on - strand, within GFF3635 at 500.427 kb on - strand, within GFF3635 at 500.427 kb on - strand, within GFF3635 at 500.490 kb on - strand, within GFF3635 at 500.490 kb on - strand, within GFF3635 at 500.585 kb on + strand, within GFF3635 at 500.585 kb on + strand, within GFF3635 at 500.598 kb on + strand, within GFF3635 at 500.598 kb on + strand, within GFF3635 at 500.598 kb on + strand, within GFF3635 at 500.742 kb on + strand at 500.742 kb on + strand at 500.742 kb on + strand at 500.742 kb on + strand at 500.743 kb on - strand at 500.743 kb on - strand at 500.743 kb on - strand at 500.795 kb on + strand at 500.795 kb on + strand at 500.795 kb on + strand at 500.796 kb on - strand at 500.796 kb on - strand at 500.796 kb on - strand at 500.825 kb on + strand at 500.825 kb on + strand at 500.825 kb on + strand at 500.825 kb on + strand at 501.274 kb on - strand, within GFF3637 at 501.274 kb on - strand, within GFF3637 at 501.392 kb on - strand, within GFF3637 at 501.507 kb on + strand at 501.507 kb on + strand at 501.674 kb on + strand, within GFF3638 at 501.674 kb on + strand, within GFF3638 at 501.674 kb on + strand, within GFF3638 at 501.675 kb on - strand, within GFF3638 at 501.915 kb on + strand, within GFF3638 at 501.915 kb on + strand, within GFF3638 at 501.916 kb on - strand, within GFF3638 at 501.916 kb on - strand, within GFF3638 at 501.916 kb on - strand, within GFF3638 at 501.922 kb on + strand, within GFF3638 at 501.922 kb on + strand, within GFF3638 at 501.922 kb on + strand, within GFF3638 at 501.923 kb on - strand, within GFF3638 at 502.009 kb on + strand, within GFF3638 at 502.010 kb on - strand, within GFF3638 at 502.010 kb on - strand, within GFF3638 at 502.010 kb on - strand, within GFF3638 at 502.063 kb on - strand, within GFF3638 at 502.063 kb on - strand, within GFF3638
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 500,019 - GFF3635 0.66 +0.1 500,229 - GFF3635 0.75 +0.3 500,229 - GFF3635 0.75 -0.8 500,229 - GFF3635 0.75 +0.7 500,229 - GFF3635 0.75 +0.5 500,229 - GFF3635 0.75 -0.3 500,232 + GFF3635 0.75 -0.2 500,232 + GFF3635 0.75 +0.1 500,232 + GFF3635 0.75 +0.1 500,232 + GFF3635 0.75 +0.6 500,233 - GFF3635 0.75 +0.1 500,233 - GFF3635 0.75 +1.3 500,233 - GFF3635 0.75 +0.3 500,233 - GFF3635 0.75 +0.2 500,233 - GFF3635 0.75 +0.9 500,233 - GFF3635 0.75 -1.2 500,233 - GFF3635 0.75 +3.2 500,288 + GFF3635 0.77 +0.5 500,289 - GFF3635 0.77 -0.4 500,289 - GFF3635 0.77 -0.0 500,289 - GFF3635 0.77 +0.2 500,299 - GFF3635 0.78 +3.1 500,426 + GFF3635 0.83 +0.4 500,427 - GFF3635 0.83 -0.2 500,427 - GFF3635 0.83 +0.5 500,427 - GFF3635 0.83 -0.5 500,490 - GFF3635 0.85 +0.1 500,490 - GFF3635 0.85 +0.5 500,585 + GFF3635 0.89 +0.5 500,585 + GFF3635 0.89 -0.7 500,598 + GFF3635 0.90 +1.5 500,598 + GFF3635 0.90 -1.6 500,598 + GFF3635 0.90 -0.3 500,742 + +0.8 500,742 + -0.0 500,742 + -1.6 500,742 + +0.1 500,743 - +1.0 500,743 - -0.4 500,743 - -0.2 500,795 + -0.2 500,795 + +0.1 500,795 + -0.7 500,796 - +0.2 500,796 - -0.9 500,796 - +2.0 500,825 + -0.2 500,825 + -0.1 500,825 + +0.1 500,825 + +0.7 501,274 - GFF3637 0.44 +2.1 501,274 - GFF3637 0.44 +1.2 501,392 - GFF3637 0.80 -1.2 501,507 + +0.5 501,507 + +0.9 501,674 + GFF3638 0.22 -0.6 501,674 + GFF3638 0.22 -0.1 501,674 + GFF3638 0.22 -1.4 501,675 - GFF3638 0.22 +3.3 501,915 + GFF3638 0.46 -1.5 501,915 + GFF3638 0.46 +0.0 501,916 - GFF3638 0.46 +1.3 501,916 - GFF3638 0.46 -0.3 501,916 - GFF3638 0.46 -0.6 501,922 + GFF3638 0.47 +0.4 501,922 + GFF3638 0.47 -1.4 501,922 + GFF3638 0.47 -0.2 501,923 - GFF3638 0.47 +0.7 502,009 + GFF3638 0.56 +0.4 502,010 - GFF3638 0.56 +0.8 502,010 - GFF3638 0.56 +0.7 502,010 - GFF3638 0.56 +1.0 502,063 - GFF3638 0.61 +0.3 502,063 - GFF3638 0.61 -0.4
Or see this region's nucleotide sequence