Strain Fitness in Xanthobacter sp. DMC5 around GFF3635

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3633 and GFF3634 are separated by 9 nucleotidesGFF3634 and GFF3635 overlap by 4 nucleotidesGFF3635 and GFF3636 are separated by 12 nucleotidesGFF3636 and GFF3637 overlap by 1 nucleotidesGFF3637 and GFF3638 overlap by 1 nucleotides GFF3632 - hypothetical protein, at 496,137 to 497,417 GFF3632 GFF3633 - hypothetical protein, at 497,414 to 497,674 GFF3633 GFF3634 - hypothetical protein, at 497,684 to 498,418 GFF3634 GFF3635 - Type IV secretion system protein virB4, at 498,415 to 500,844 GFF3635 GFF3636 - hypothetical protein, at 500,857 to 501,129 GFF3636 GFF3637 - hypothetical protein, at 501,129 to 501,458 GFF3637 GFF3638 - hypothetical protein, at 501,458 to 502,444 GFF3638 Position (kb) 498 499 500 501Strain fitness (log2 ratio) -1 0 1 2 3 4at 497.440 kb on + strand, within GFF3633at 497.440 kb on + strand, within GFF3633at 497.441 kb on - strand, within GFF3633at 497.444 kb on + strand, within GFF3633at 497.444 kb on + strand, within GFF3633at 497.444 kb on + strand, within GFF3633at 497.444 kb on + strand, within GFF3633at 497.444 kb on + strand, within GFF3633at 497.445 kb on - strand, within GFF3633at 497.445 kb on - strand, within GFF3633at 497.445 kb on - strand, within GFF3633at 497.445 kb on - strand, within GFF3633at 497.721 kb on + strandat 497.721 kb on + strandat 497.721 kb on + strandat 498.081 kb on + strand, within GFF3634at 498.081 kb on + strand, within GFF3634at 498.120 kb on + strand, within GFF3634at 498.120 kb on + strand, within GFF3634at 498.120 kb on + strand, within GFF3634at 498.121 kb on - strand, within GFF3634at 498.195 kb on + strand, within GFF3634at 498.196 kb on - strand, within GFF3634at 498.196 kb on - strand, within GFF3634at 498.315 kb on + strand, within GFF3634at 498.315 kb on + strand, within GFF3634at 498.315 kb on + strand, within GFF3634at 498.316 kb on - strand, within GFF3634at 498.316 kb on - strand, within GFF3634at 498.316 kb on - strand, within GFF3634at 498.330 kb on + strand, within GFF3634at 498.330 kb on + strand, within GFF3634at 498.339 kb on + strand, within GFF3634at 498.339 kb on + strand, within GFF3634at 498.339 kb on + strand, within GFF3634at 498.484 kb on + strandat 498.484 kb on + strandat 498.485 kb on - strandat 498.485 kb on - strandat 498.635 kb on + strandat 498.636 kb on - strandat 498.638 kb on + strandat 498.638 kb on + strandat 498.638 kb on + strandat 498.638 kb on + strandat 498.638 kb on + strandat 498.638 kb on + strandat 498.638 kb on + strandat 498.639 kb on - strandat 498.639 kb on - strandat 498.705 kb on - strand, within GFF3635at 498.726 kb on + strand, within GFF3635at 498.751 kb on + strand, within GFF3635at 498.751 kb on + strand, within GFF3635at 498.776 kb on + strand, within GFF3635at 498.777 kb on + strand, within GFF3635at 498.777 kb on + strand, within GFF3635at 498.777 kb on + strand, within GFF3635at 498.778 kb on - strand, within GFF3635at 498.778 kb on - strand, within GFF3635at 498.803 kb on - strand, within GFF3635at 498.853 kb on + strand, within GFF3635at 498.853 kb on + strand, within GFF3635at 498.977 kb on + strand, within GFF3635at 498.977 kb on + strand, within GFF3635at 498.977 kb on + strand, within GFF3635at 498.977 kb on + strand, within GFF3635at 498.977 kb on + strand, within GFF3635at 498.977 kb on + strand, within GFF3635at 498.977 kb on + strand, within GFF3635at 498.978 kb on - strand, within GFF3635at 498.978 kb on - strand, within GFF3635at 499.103 kb on + strand, within GFF3635at 499.103 kb on + strand, within GFF3635at 499.104 kb on - strand, within GFF3635at 499.212 kb on + strand, within GFF3635at 499.212 kb on + strand, within GFF3635at 499.212 kb on + strand, within GFF3635at 499.212 kb on + strand, within GFF3635at 499.213 kb on - strand, within GFF3635at 499.213 kb on - strand, within GFF3635at 499.213 kb on - strand, within GFF3635at 499.213 kb on - strand, within GFF3635at 499.238 kb on + strand, within GFF3635at 499.442 kb on + strand, within GFF3635at 499.442 kb on + strand, within GFF3635at 499.442 kb on + strand, within GFF3635at 499.578 kb on - strand, within GFF3635at 499.694 kb on + strand, within GFF3635at 499.694 kb on + strand, within GFF3635at 499.694 kb on + strand, within GFF3635at 499.694 kb on + strand, within GFF3635at 499.695 kb on - strand, within GFF3635at 499.695 kb on - strand, within GFF3635at 499.695 kb on - strand, within GFF3635at 499.695 kb on - strand, within GFF3635at 499.695 kb on - strand, within GFF3635at 499.695 kb on - strand, within GFF3635at 499.854 kb on - strand, within GFF3635at 499.854 kb on - strand, within GFF3635at 499.854 kb on - strand, within GFF3635at 500.019 kb on - strand, within GFF3635at 500.229 kb on - strand, within GFF3635at 500.229 kb on - strand, within GFF3635at 500.229 kb on - strand, within GFF3635at 500.229 kb on - strand, within GFF3635at 500.229 kb on - strand, within GFF3635at 500.232 kb on + strand, within GFF3635at 500.232 kb on + strand, within GFF3635at 500.232 kb on + strand, within GFF3635at 500.232 kb on + strand, within GFF3635at 500.233 kb on - strand, within GFF3635at 500.233 kb on - strand, within GFF3635at 500.233 kb on - strand, within GFF3635at 500.233 kb on - strand, within GFF3635at 500.233 kb on - strand, within GFF3635at 500.233 kb on - strand, within GFF3635at 500.233 kb on - strand, within GFF3635at 500.288 kb on + strand, within GFF3635at 500.289 kb on - strand, within GFF3635at 500.289 kb on - strand, within GFF3635at 500.289 kb on - strand, within GFF3635at 500.299 kb on - strand, within GFF3635at 500.426 kb on + strand, within GFF3635at 500.427 kb on - strand, within GFF3635at 500.427 kb on - strand, within GFF3635at 500.427 kb on - strand, within GFF3635at 500.490 kb on - strand, within GFF3635at 500.490 kb on - strand, within GFF3635at 500.585 kb on + strand, within GFF3635at 500.585 kb on + strand, within GFF3635at 500.598 kb on + strand, within GFF3635at 500.598 kb on + strand, within GFF3635at 500.598 kb on + strand, within GFF3635at 500.742 kb on + strandat 500.742 kb on + strandat 500.742 kb on + strandat 500.742 kb on + strandat 500.743 kb on - strandat 500.743 kb on - strandat 500.743 kb on - strandat 500.795 kb on + strandat 500.795 kb on + strandat 500.795 kb on + strandat 500.796 kb on - strandat 500.796 kb on - strandat 500.796 kb on - strandat 500.825 kb on + strandat 500.825 kb on + strandat 500.825 kb on + strandat 500.825 kb on + strandat 501.274 kb on - strand, within GFF3637at 501.274 kb on - strand, within GFF3637at 501.392 kb on - strand, within GFF3637at 501.507 kb on + strandat 501.507 kb on + strandat 501.674 kb on + strand, within GFF3638at 501.674 kb on + strand, within GFF3638at 501.674 kb on + strand, within GFF3638at 501.675 kb on - strand, within GFF3638

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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497,440 + GFF3633 0.10 -1.1
497,440 + GFF3633 0.10 -0.5
497,441 - GFF3633 0.10 +0.2
497,444 + GFF3633 0.11 +0.2
497,444 + GFF3633 0.11 +0.1
497,444 + GFF3633 0.11 +0.9
497,444 + GFF3633 0.11 +0.7
497,444 + GFF3633 0.11 -0.1
497,445 - GFF3633 0.12 +1.3
497,445 - GFF3633 0.12 +0.0
497,445 - GFF3633 0.12 -1.1
497,445 - GFF3633 0.12 -0.0
497,721 + +0.4
497,721 + -1.7
497,721 + -0.4
498,081 + GFF3634 0.54 +0.0
498,081 + GFF3634 0.54 -0.9
498,120 + GFF3634 0.59 +1.0
498,120 + GFF3634 0.59 -0.2
498,120 + GFF3634 0.59 -1.4
498,121 - GFF3634 0.59 +0.1
498,195 + GFF3634 0.70 -0.0
498,196 - GFF3634 0.70 -1.5
498,196 - GFF3634 0.70 -0.3
498,315 + GFF3634 0.86 +1.4
498,315 + GFF3634 0.86 +0.4
498,315 + GFF3634 0.86 +1.1
498,316 - GFF3634 0.86 +0.1
498,316 - GFF3634 0.86 -0.6
498,316 - GFF3634 0.86 -0.5
498,330 + GFF3634 0.88 +0.4
498,330 + GFF3634 0.88 +0.0
498,339 + GFF3634 0.89 -0.1
498,339 + GFF3634 0.89 +0.3
498,339 + GFF3634 0.89 +0.4
498,484 + -0.6
498,484 + -0.6
498,485 - +3.5
498,485 - +3.8
498,635 + -0.7
498,636 - +3.6
498,638 + -0.6
498,638 + -0.7
498,638 + +1.1
498,638 + -0.4
498,638 + +0.9
498,638 + -0.0
498,638 + +0.1
498,639 - +1.1
498,639 - +1.7
498,705 - GFF3635 0.12 +2.7
498,726 + GFF3635 0.13 -1.1
498,751 + GFF3635 0.14 +1.1
498,751 + GFF3635 0.14 -0.7
498,776 + GFF3635 0.15 -0.7
498,777 + GFF3635 0.15 -0.0
498,777 + GFF3635 0.15 -1.3
498,777 + GFF3635 0.15 +1.1
498,778 - GFF3635 0.15 -0.1
498,778 - GFF3635 0.15 -0.2
498,803 - GFF3635 0.16 +1.3
498,853 + GFF3635 0.18 +1.3
498,853 + GFF3635 0.18 +0.4
498,977 + GFF3635 0.23 +0.1
498,977 + GFF3635 0.23 +0.4
498,977 + GFF3635 0.23 +0.2
498,977 + GFF3635 0.23 +0.3
498,977 + GFF3635 0.23 +0.4
498,977 + GFF3635 0.23 +0.3
498,977 + GFF3635 0.23 +0.9
498,978 - GFF3635 0.23 -1.5
498,978 - GFF3635 0.23 +0.6
499,103 + GFF3635 0.28 +0.7
499,103 + GFF3635 0.28 -0.5
499,104 - GFF3635 0.28 +0.0
499,212 + GFF3635 0.33 +1.4
499,212 + GFF3635 0.33 -1.1
499,212 + GFF3635 0.33 -0.5
499,212 + GFF3635 0.33 -0.0
499,213 - GFF3635 0.33 +1.5
499,213 - GFF3635 0.33 +0.2
499,213 - GFF3635 0.33 -1.2
499,213 - GFF3635 0.33 +0.6
499,238 + GFF3635 0.34 +1.2
499,442 + GFF3635 0.42 -0.1
499,442 + GFF3635 0.42 +1.1
499,442 + GFF3635 0.42 -1.2
499,578 - GFF3635 0.48 -0.5
499,694 + GFF3635 0.53 -1.5
499,694 + GFF3635 0.53 -0.3
499,694 + GFF3635 0.53 -0.0
499,694 + GFF3635 0.53 +0.2
499,695 - GFF3635 0.53 -0.2
499,695 - GFF3635 0.53 +0.4
499,695 - GFF3635 0.53 +0.1
499,695 - GFF3635 0.53 +0.5
499,695 - GFF3635 0.53 -0.7
499,695 - GFF3635 0.53 +0.6
499,854 - GFF3635 0.59 +0.1
499,854 - GFF3635 0.59 -0.0
499,854 - GFF3635 0.59 -0.6
500,019 - GFF3635 0.66 +0.1
500,229 - GFF3635 0.75 +0.3
500,229 - GFF3635 0.75 -0.8
500,229 - GFF3635 0.75 +0.7
500,229 - GFF3635 0.75 +0.5
500,229 - GFF3635 0.75 -0.3
500,232 + GFF3635 0.75 -0.2
500,232 + GFF3635 0.75 +0.1
500,232 + GFF3635 0.75 +0.1
500,232 + GFF3635 0.75 +0.6
500,233 - GFF3635 0.75 +0.1
500,233 - GFF3635 0.75 +1.3
500,233 - GFF3635 0.75 +0.3
500,233 - GFF3635 0.75 +0.2
500,233 - GFF3635 0.75 +0.9
500,233 - GFF3635 0.75 -1.2
500,233 - GFF3635 0.75 +3.2
500,288 + GFF3635 0.77 +0.5
500,289 - GFF3635 0.77 -0.4
500,289 - GFF3635 0.77 -0.0
500,289 - GFF3635 0.77 +0.2
500,299 - GFF3635 0.78 +3.1
500,426 + GFF3635 0.83 +0.4
500,427 - GFF3635 0.83 -0.2
500,427 - GFF3635 0.83 +0.5
500,427 - GFF3635 0.83 -0.5
500,490 - GFF3635 0.85 +0.1
500,490 - GFF3635 0.85 +0.5
500,585 + GFF3635 0.89 +0.5
500,585 + GFF3635 0.89 -0.7
500,598 + GFF3635 0.90 +1.5
500,598 + GFF3635 0.90 -1.6
500,598 + GFF3635 0.90 -0.3
500,742 + +0.8
500,742 + -0.0
500,742 + -1.6
500,742 + +0.1
500,743 - +1.0
500,743 - -0.4
500,743 - -0.2
500,795 + -0.2
500,795 + +0.1
500,795 + -0.7
500,796 - +0.2
500,796 - -0.9
500,796 - +2.0
500,825 + -0.2
500,825 + -0.1
500,825 + +0.1
500,825 + +0.7
501,274 - GFF3637 0.44 +2.1
501,274 - GFF3637 0.44 +1.2
501,392 - GFF3637 0.80 -1.2
501,507 + +0.5
501,507 + +0.9
501,674 + GFF3638 0.22 -0.6
501,674 + GFF3638 0.22 -0.1
501,674 + GFF3638 0.22 -1.4
501,675 - GFF3638 0.22 +3.3

Or see this region's nucleotide sequence