Strain Fitness in Xanthobacter sp. DMC5 around GFF3617

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3617 and GFF3618 are separated by 13 nucleotides GFF3617 - hypothetical protein, at 481,663 to 482,781 GFF3617 GFF3618 - hypothetical protein, at 482,795 to 484,603 GFF3618 Position (kb) 481 482 483Strain fitness (log2 ratio) -2 -1 0 1 2at 480.670 kb on + strandat 480.670 kb on + strandat 480.671 kb on - strandat 480.671 kb on - strandat 481.033 kb on + strandat 481.033 kb on + strandat 481.034 kb on - strandat 481.034 kb on - strandat 481.055 kb on - strandat 481.066 kb on + strandat 481.067 kb on - strandat 481.071 kb on + strandat 481.072 kb on - strandat 481.083 kb on + strandat 481.091 kb on - strandat 481.114 kb on - strandat 481.115 kb on + strandat 481.115 kb on + strandat 481.115 kb on + strandat 481.116 kb on - strandat 481.116 kb on - strandat 481.139 kb on + strandat 481.152 kb on - strandat 481.361 kb on + strandat 481.361 kb on + strandat 481.392 kb on + strandat 481.392 kb on + strandat 481.393 kb on - strandat 481.393 kb on - strandat 481.393 kb on - strandat 481.429 kb on + strandat 481.429 kb on + strandat 481.429 kb on + strandat 481.532 kb on + strandat 481.532 kb on + strandat 481.533 kb on - strandat 481.569 kb on - strandat 481.569 kb on - strandat 481.569 kb on - strandat 481.612 kb on + strandat 481.612 kb on + strandat 481.613 kb on - strandat 481.613 kb on - strandat 481.613 kb on - strandat 481.613 kb on - strandat 481.640 kb on + strandat 481.640 kb on + strandat 481.641 kb on - strandat 481.641 kb on - strandat 481.641 kb on - strandat 481.659 kb on + strandat 481.701 kb on - strandat 481.701 kb on - strandat 481.701 kb on - strandat 481.701 kb on - strandat 481.701 kb on - strandat 481.701 kb on - strandat 481.701 kb on - strandat 481.838 kb on + strand, within GFF3617at 481.838 kb on + strand, within GFF3617at 481.838 kb on + strand, within GFF3617at 481.838 kb on + strand, within GFF3617at 481.838 kb on + strand, within GFF3617at 481.838 kb on + strand, within GFF3617at 481.838 kb on + strand, within GFF3617at 481.839 kb on - strand, within GFF3617at 481.839 kb on - strand, within GFF3617at 481.839 kb on - strand, within GFF3617at 481.839 kb on - strand, within GFF3617at 481.839 kb on - strand, within GFF3617at 481.839 kb on - strand, within GFF3617at 481.839 kb on - strand, within GFF3617at 481.839 kb on - strand, within GFF3617at 481.839 kb on - strand, within GFF3617at 481.842 kb on + strand, within GFF3617at 481.842 kb on + strand, within GFF3617at 481.843 kb on - strand, within GFF3617at 481.843 kb on - strand, within GFF3617at 481.881 kb on - strand, within GFF3617at 481.881 kb on - strand, within GFF3617at 481.881 kb on - strand, within GFF3617at 482.066 kb on + strand, within GFF3617at 482.066 kb on + strand, within GFF3617at 482.067 kb on - strand, within GFF3617at 482.067 kb on - strand, within GFF3617at 482.067 kb on - strand, within GFF3617at 482.100 kb on - strand, within GFF3617at 482.145 kb on + strand, within GFF3617at 482.526 kb on - strand, within GFF3617at 482.526 kb on - strand, within GFF3617at 482.526 kb on - strand, within GFF3617at 482.526 kb on - strand, within GFF3617at 482.526 kb on - strand, within GFF3617at 482.526 kb on - strand, within GFF3617at 482.526 kb on - strand, within GFF3617at 482.526 kb on - strand, within GFF3617at 482.526 kb on - strand, within GFF3617at 482.526 kb on - strand, within GFF3617at 482.676 kb on - strandat 482.676 kb on - strandat 482.699 kb on + strandat 482.699 kb on + strandat 482.699 kb on + strandat 482.700 kb on - strandat 482.700 kb on - strandat 482.700 kb on - strandat 482.812 kb on - strandat 482.812 kb on - strandat 482.926 kb on + strandat 483.174 kb on + strand, within GFF3618at 483.174 kb on + strand, within GFF3618at 483.174 kb on + strand, within GFF3618at 483.174 kb on + strand, within GFF3618at 483.174 kb on + strand, within GFF3618at 483.174 kb on + strand, within GFF3618at 483.174 kb on + strand, within GFF3618at 483.174 kb on + strand, within GFF3618at 483.174 kb on + strand, within GFF3618at 483.174 kb on + strand, within GFF3618at 483.174 kb on + strand, within GFF3618at 483.174 kb on + strand, within GFF3618at 483.175 kb on - strand, within GFF3618at 483.175 kb on - strand, within GFF3618at 483.175 kb on - strand, within GFF3618at 483.175 kb on - strand, within GFF3618at 483.175 kb on - strand, within GFF3618at 483.175 kb on - strand, within GFF3618at 483.175 kb on - strand, within GFF3618at 483.175 kb on - strand, within GFF3618at 483.175 kb on - strand, within GFF3618at 483.175 kb on - strand, within GFF3618at 483.175 kb on - strand, within GFF3618at 483.175 kb on - strand, within GFF3618at 483.175 kb on - strand, within GFF3618at 483.175 kb on - strand, within GFF3618at 483.175 kb on - strand, within GFF3618at 483.175 kb on - strand, within GFF3618at 483.192 kb on - strand, within GFF3618at 483.248 kb on - strand, within GFF3618at 483.248 kb on - strand, within GFF3618at 483.389 kb on + strand, within GFF3618at 483.426 kb on + strand, within GFF3618at 483.426 kb on + strand, within GFF3618at 483.427 kb on - strand, within GFF3618at 483.510 kb on + strand, within GFF3618at 483.510 kb on + strand, within GFF3618at 483.510 kb on + strand, within GFF3618at 483.510 kb on + strand, within GFF3618at 483.510 kb on + strand, within GFF3618at 483.510 kb on + strand, within GFF3618at 483.714 kb on + strand, within GFF3618at 483.757 kb on - strand, within GFF3618at 483.757 kb on - strand, within GFF3618at 483.757 kb on - strand, within GFF3618at 483.757 kb on - strand, within GFF3618at 483.757 kb on - strand, within GFF3618at 483.757 kb on - strand, within GFF3618

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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480,670 + -0.2
480,670 + +0.0
480,671 - -1.0
480,671 - +0.3
481,033 + -0.6
481,033 + -0.7
481,034 - -1.2
481,034 - -0.2
481,055 - -1.2
481,066 + -0.1
481,067 - +1.6
481,071 + -0.6
481,072 - -1.2
481,083 + -0.3
481,091 - +2.6
481,114 - +0.2
481,115 + +0.8
481,115 + -2.2
481,115 + +1.3
481,116 - -0.8
481,116 - +2.6
481,139 + +0.2
481,152 - +0.1
481,361 + +1.1
481,361 + -0.5
481,392 + +0.8
481,392 + -0.6
481,393 - +0.6
481,393 - +0.5
481,393 - +1.4
481,429 + +0.6
481,429 + -0.7
481,429 + -0.6
481,532 + -0.3
481,532 + -0.3
481,533 - -0.7
481,569 - -0.5
481,569 - +0.5
481,569 - +0.2
481,612 + -2.2
481,612 + +1.6
481,613 - +0.0
481,613 - -0.0
481,613 - -0.2
481,613 - +0.1
481,640 + +0.4
481,640 + -0.1
481,641 - +0.6
481,641 - -0.5
481,641 - -0.4
481,659 + +0.6
481,701 - +0.7
481,701 - +0.8
481,701 - -1.7
481,701 - +0.1
481,701 - +1.0
481,701 - +0.7
481,701 - -0.1
481,838 + GFF3617 0.16 -0.3
481,838 + GFF3617 0.16 -0.2
481,838 + GFF3617 0.16 +0.6
481,838 + GFF3617 0.16 -0.8
481,838 + GFF3617 0.16 +1.4
481,838 + GFF3617 0.16 +0.1
481,838 + GFF3617 0.16 +0.1
481,839 - GFF3617 0.16 -1.2
481,839 - GFF3617 0.16 +0.6
481,839 - GFF3617 0.16 +0.3
481,839 - GFF3617 0.16 +1.2
481,839 - GFF3617 0.16 -0.1
481,839 - GFF3617 0.16 +0.7
481,839 - GFF3617 0.16 -0.2
481,839 - GFF3617 0.16 +1.7
481,839 - GFF3617 0.16 +0.8
481,842 + GFF3617 0.16 +1.3
481,842 + GFF3617 0.16 -0.7
481,843 - GFF3617 0.16 +0.1
481,843 - GFF3617 0.16 -0.0
481,881 - GFF3617 0.19 -0.9
481,881 - GFF3617 0.19 -0.8
481,881 - GFF3617 0.19 +1.5
482,066 + GFF3617 0.36 -0.1
482,066 + GFF3617 0.36 -0.1
482,067 - GFF3617 0.36 +0.0
482,067 - GFF3617 0.36 +0.8
482,067 - GFF3617 0.36 -0.7
482,100 - GFF3617 0.39 +1.1
482,145 + GFF3617 0.43 +0.6
482,526 - GFF3617 0.77 -0.4
482,526 - GFF3617 0.77 -0.0
482,526 - GFF3617 0.77 +0.9
482,526 - GFF3617 0.77 +0.3
482,526 - GFF3617 0.77 -1.0
482,526 - GFF3617 0.77 -0.9
482,526 - GFF3617 0.77 +0.2
482,526 - GFF3617 0.77 +0.1
482,526 - GFF3617 0.77 +0.9
482,526 - GFF3617 0.77 -1.3
482,676 - +0.8
482,676 - +0.5
482,699 + -0.5
482,699 + +0.5
482,699 + +0.4
482,700 - -2.5
482,700 - -0.2
482,700 - +0.2
482,812 - +0.5
482,812 - +0.6
482,926 + +0.5
483,174 + GFF3618 0.21 +0.4
483,174 + GFF3618 0.21 +0.9
483,174 + GFF3618 0.21 -0.2
483,174 + GFF3618 0.21 +0.6
483,174 + GFF3618 0.21 +0.3
483,174 + GFF3618 0.21 -0.3
483,174 + GFF3618 0.21 -0.4
483,174 + GFF3618 0.21 -2.6
483,174 + GFF3618 0.21 -0.8
483,174 + GFF3618 0.21 +0.0
483,174 + GFF3618 0.21 -0.1
483,174 + GFF3618 0.21 -0.4
483,175 - GFF3618 0.21 -0.5
483,175 - GFF3618 0.21 +1.7
483,175 - GFF3618 0.21 +1.3
483,175 - GFF3618 0.21 +1.0
483,175 - GFF3618 0.21 -0.0
483,175 - GFF3618 0.21 -1.5
483,175 - GFF3618 0.21 -0.2
483,175 - GFF3618 0.21 -0.6
483,175 - GFF3618 0.21 -1.1
483,175 - GFF3618 0.21 +1.5
483,175 - GFF3618 0.21 +0.3
483,175 - GFF3618 0.21 +0.2
483,175 - GFF3618 0.21 +0.3
483,175 - GFF3618 0.21 +0.1
483,175 - GFF3618 0.21 +0.1
483,175 - GFF3618 0.21 -0.4
483,192 - GFF3618 0.22 -0.0
483,248 - GFF3618 0.25 -0.4
483,248 - GFF3618 0.25 -0.2
483,389 + GFF3618 0.33 +0.2
483,426 + GFF3618 0.35 +0.7
483,426 + GFF3618 0.35 +0.7
483,427 - GFF3618 0.35 +1.1
483,510 + GFF3618 0.40 +0.2
483,510 + GFF3618 0.40 -1.8
483,510 + GFF3618 0.40 -0.7
483,510 + GFF3618 0.40 -0.5
483,510 + GFF3618 0.40 +0.2
483,510 + GFF3618 0.40 +0.3
483,714 + GFF3618 0.51 -0.0
483,757 - GFF3618 0.53 +0.1
483,757 - GFF3618 0.53 +0.9
483,757 - GFF3618 0.53 +0.5
483,757 - GFF3618 0.53 -2.3
483,757 - GFF3618 0.53 +0.9
483,757 - GFF3618 0.53 -0.2

Or see this region's nucleotide sequence