Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3615 and GFF3616 are separated by 538 nucleotides
GFF3615 - DNA replication and repair protein RecF, at 477,203 to 479,011
GFF3615
GFF3616 - hypothetical protein, at 479,550 to 479,858
GFF3616
Position (kb) 479
480 Strain fitness (log2 ratio) -2
-1
0
1
2 at 478.566 kb on + strand, within GFF3615 at 478.566 kb on + strand, within GFF3615 at 478.567 kb on - strand, within GFF3615 at 478.567 kb on - strand, within GFF3615 at 478.567 kb on - strand, within GFF3615 at 478.606 kb on + strand, within GFF3615 at 478.606 kb on + strand, within GFF3615 at 478.606 kb on + strand, within GFF3615 at 478.606 kb on + strand, within GFF3615 at 478.606 kb on + strand, within GFF3615 at 478.606 kb on + strand, within GFF3615 at 478.606 kb on + strand, within GFF3615 at 478.606 kb on + strand, within GFF3615 at 478.607 kb on - strand, within GFF3615 at 478.607 kb on - strand, within GFF3615 at 478.607 kb on - strand, within GFF3615 at 478.607 kb on - strand, within GFF3615 at 478.607 kb on - strand, within GFF3615 at 478.608 kb on + strand, within GFF3615 at 478.608 kb on + strand, within GFF3615 at 478.608 kb on + strand, within GFF3615 at 478.609 kb on - strand, within GFF3615 at 478.663 kb on + strand, within GFF3615 at 478.663 kb on + strand, within GFF3615 at 478.663 kb on + strand, within GFF3615 at 478.663 kb on + strand, within GFF3615 at 478.663 kb on + strand, within GFF3615 at 478.664 kb on - strand, within GFF3615 at 479.102 kb on + strand at 479.103 kb on - strand at 479.119 kb on + strand at 479.119 kb on + strand at 479.119 kb on + strand at 479.119 kb on + strand at 479.119 kb on + strand at 479.120 kb on - strand at 479.120 kb on - strand at 479.120 kb on - strand at 479.120 kb on - strand at 479.120 kb on - strand at 479.193 kb on + strand at 479.193 kb on + strand at 479.194 kb on - strand at 479.204 kb on + strand at 479.205 kb on - strand at 479.205 kb on - strand at 479.207 kb on - strand at 479.311 kb on + strand at 479.312 kb on - strand at 479.449 kb on + strand at 479.450 kb on - strand at 479.468 kb on + strand at 479.468 kb on + strand at 479.469 kb on - strand at 479.473 kb on + strand at 479.473 kb on + strand at 479.474 kb on - strand at 479.561 kb on + strand at 479.667 kb on + strand, within GFF3616 at 479.667 kb on + strand, within GFF3616 at 479.667 kb on + strand, within GFF3616 at 479.667 kb on + strand, within GFF3616 at 479.728 kb on + strand, within GFF3616 at 479.728 kb on + strand, within GFF3616 at 479.728 kb on + strand, within GFF3616 at 479.729 kb on - strand, within GFF3616 at 479.729 kb on - strand, within GFF3616 at 479.729 kb on - strand, within GFF3616 at 479.957 kb on + strand at 479.962 kb on + strand at 479.962 kb on + strand at 479.962 kb on + strand at 479.962 kb on + strand at 479.962 kb on + strand at 479.962 kb on + strand at 479.962 kb on + strand at 479.962 kb on + strand at 479.962 kb on + strand at 479.962 kb on + strand at 479.962 kb on + strand at 479.963 kb on - strand at 479.963 kb on - strand at 479.963 kb on - strand at 479.963 kb on - strand at 479.963 kb on - strand at 479.963 kb on - strand at 479.963 kb on - strand at 479.963 kb on - strand at 479.963 kb on - strand at 479.963 kb on - strand at 480.025 kb on + strand at 480.026 kb on - strand at 480.026 kb on - strand at 480.086 kb on - strand at 480.086 kb on - strand at 480.139 kb on + strand at 480.139 kb on + strand at 480.139 kb on + strand at 480.140 kb on - strand at 480.140 kb on - strand at 480.152 kb on + strand at 480.172 kb on + strand at 480.172 kb on + strand at 480.173 kb on - strand at 480.173 kb on - strand at 480.173 kb on - strand at 480.240 kb on + strand at 480.240 kb on + strand at 480.241 kb on - strand at 480.311 kb on + strand at 480.312 kb on - strand at 480.362 kb on + strand at 480.455 kb on + strand at 480.496 kb on + strand at 480.496 kb on + strand at 480.496 kb on + strand at 480.521 kb on + strand at 480.634 kb on + strand at 480.634 kb on + strand at 480.635 kb on - strand at 480.635 kb on - strand at 480.670 kb on + strand at 480.670 kb on + strand at 480.671 kb on - strand at 480.671 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 478,566 + GFF3615 0.75 +0.7 478,566 + GFF3615 0.75 -0.3 478,567 - GFF3615 0.75 -0.8 478,567 - GFF3615 0.75 -0.2 478,567 - GFF3615 0.75 -0.2 478,606 + GFF3615 0.78 -0.2 478,606 + GFF3615 0.78 +0.7 478,606 + GFF3615 0.78 +0.5 478,606 + GFF3615 0.78 +0.1 478,606 + GFF3615 0.78 +1.1 478,606 + GFF3615 0.78 -1.2 478,606 + GFF3615 0.78 +0.4 478,606 + GFF3615 0.78 +0.1 478,607 - GFF3615 0.78 -0.0 478,607 - GFF3615 0.78 +0.3 478,607 - GFF3615 0.78 +0.8 478,607 - GFF3615 0.78 -0.3 478,607 - GFF3615 0.78 +1.0 478,608 + GFF3615 0.78 +0.7 478,608 + GFF3615 0.78 -0.1 478,608 + GFF3615 0.78 -0.0 478,609 - GFF3615 0.78 -0.3 478,663 + GFF3615 0.81 +0.1 478,663 + GFF3615 0.81 -1.0 478,663 + GFF3615 0.81 -0.6 478,663 + GFF3615 0.81 +1.2 478,663 + GFF3615 0.81 -1.2 478,664 - GFF3615 0.81 +0.2 479,102 + +0.4 479,103 - +0.3 479,119 + +1.2 479,119 + +0.4 479,119 + +0.2 479,119 + -1.0 479,119 + +0.8 479,120 - +0.4 479,120 - -0.8 479,120 - -2.4 479,120 - -0.2 479,120 - +0.4 479,193 + +0.6 479,193 + +1.3 479,194 - -1.1 479,204 + -0.6 479,205 - +0.7 479,205 - +0.3 479,207 - -0.5 479,311 + +0.1 479,312 - +0.3 479,449 + +0.9 479,450 - +1.2 479,468 + +0.2 479,468 + -0.2 479,469 - +0.5 479,473 + +0.8 479,473 + +0.5 479,474 - -1.7 479,561 + +0.3 479,667 + GFF3616 0.38 +0.9 479,667 + GFF3616 0.38 -1.4 479,667 + GFF3616 0.38 +0.5 479,667 + GFF3616 0.38 -0.1 479,728 + GFF3616 0.58 -0.6 479,728 + GFF3616 0.58 +0.7 479,728 + GFF3616 0.58 +0.5 479,729 - GFF3616 0.58 -1.2 479,729 - GFF3616 0.58 +0.1 479,729 - GFF3616 0.58 +1.2 479,957 + +0.3 479,962 + -0.2 479,962 + +1.1 479,962 + -1.1 479,962 + +1.5 479,962 + -0.7 479,962 + +0.3 479,962 + -1.6 479,962 + -1.4 479,962 + +0.8 479,962 + -0.7 479,962 + +0.1 479,963 - +0.1 479,963 - -0.0 479,963 - -0.4 479,963 - -0.7 479,963 - -1.0 479,963 - +1.9 479,963 - +0.3 479,963 - -0.4 479,963 - -1.1 479,963 - +0.5 480,025 + +0.3 480,026 - +0.7 480,026 - +0.1 480,086 - -0.7 480,086 - -0.4 480,139 + -0.0 480,139 + -0.0 480,139 + +0.1 480,140 - +1.9 480,140 - +1.0 480,152 + -0.3 480,172 + -1.2 480,172 + -1.0 480,173 - +0.6 480,173 - +0.5 480,173 - -1.4 480,240 + -0.9 480,240 + -0.1 480,241 - -0.2 480,311 + +1.8 480,312 - +0.7 480,362 + -1.8 480,455 + +0.6 480,496 + -0.7 480,496 + +0.9 480,496 + +0.5 480,521 + -0.3 480,634 + -1.2 480,634 + -0.4 480,635 - -0.2 480,635 - -0.9 480,670 + -0.2 480,670 + +0.0 480,671 - -1.0 480,671 - +0.3
Or see this region's nucleotide sequence